Posted by
OBEID Patricia 154904 on
Aug 03, 2020; 10:36am
URL: http://imagej.273.s1.nabble.com/open-ROI-zip-tp5023799p5023804.html
replace(path, "ROI.zip", "d1.C01");
=> There is no variable with the name 'path' in your posted macro!
Yes, it is an error because I tried a lot of things to open the ROI.zip ...
It doesn't work and I cannot continue writing the macro because it all depends on the opening of the ROI ... :-(
( I assume you want to open an image after opening the Rois. Therefore you exchange the "ROI.zip" and "d1.C01".
Is your image file ending with "d1.C01". Is there no extension (e.g.
.tif)? )
That's right. The images were done by a Cellomics machine and the extension is .C01. No problem with that.
I come back to the starting point, how to open the ROI ?...
-----Message d'origine-----
De : ImageJ Interest Group <
[hidden email]> De la part de Peter Haub
Envoyé : lundi 3 août 2020 12:09
À :
[hidden email]
Objet : Re: open ROI.zip
".. it does not work .."
What happens?
replace(path, "ROI.zip", "d1.C01");
=> There is no variable with the name 'path' in your posted macro!
( I assume you want to open an image after opening the Rois. Therefore you exchange the "ROI.zip" and "d1.C01".
Is your image file ending with "d1.C01". Is there no extension (e.g.
.tif)? )
On 03.08.2020 11:51, OBEID Patricia 154904 wrote:
> Thanks Peter,
> The problem is, I have a long list of images and ROIs. I want to open the image and the corresponding ROIManager and therefore make a loop for my treatments but it does not work.
> I started my macro like this:
>
> dir = getDirectory("Choose a Directory ");
> dir3 = getDirectory("Choose Destination Directory ");
>
> list = getFileList(dir);
> setBatchMode(true);
> for (i=0; i<list.length; i++) {
> if (endsWith(list[i], "ROI.zip")){ //A ADAPTER AU NOM DU CHANNEL
> roiManager("open", dir+list[i]);
>
> //ouvrir image des noyaux
> pathNuc = replace(path, "ROI.zip", "d1.C01");
> fileNuc = replace(list[i], "ROI.zip", "d1.C01");
> open(pathNuc);
>
> Can you help me find out what is wrong?
> Thank you
>
>
>
>
> -----Message d'origine-----
> De : ImageJ Interest Group <
[hidden email]> De la part de Peter
> Haub Envoyé : lundi 3 août 2020 11:20 À :
[hidden email] Objet :
> Re: open ROI.zip
>
> Hi
>
> you can use the Plugins>Macros>Record... function to record the command you are currently using manually.
> This gives at least important hints.
>
> Here is the result for your question:
>
> // (optinal) reset RoiManager
> roiManager("reset");
>
> // Select a roi.zip file vai File Open dialog run("Open...");
>
> // .. alternatively use a path string pointing to the zip file
>
> //roiManager("reset");
> //roiManager("Open", "C:\\PATH_TO_\\RoiSet.zip");
>
> Peter
>
> On 03.08.2020 11:01, OBEID Patricia 154904 wrote:
>> Hello,
>> I would like using a macro to open the ROI.zip (generated previously in a 1st macro) and apply them to images.
>> I write 2 macros to simplify my script writing.
>> But I don't know how to write the command line to open ROI.zip.
>> Could you help me please ?
>> I thank you in advance.
>> Patricia
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>> Recherche Interdisciplinaire de Grenoble CEA/DRF / IRIG / DS /BGE
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