Make sure your path string is correct, e.g. by using the following in
> replace(path, "ROI.zip", "d1.C01");
> => There is no variable with the name 'path' in your posted macro!
> Yes, it is an error because I tried a lot of things to open the ROI.zip ...
> It doesn't work and I cannot continue writing the macro because it all depends on the opening of the ROI ... :-(
>
> ( I assume you want to open an image after opening the Rois. Therefore you exchange the "ROI.zip" and "d1.C01".
> Is your image file ending with "d1.C01". Is there no extension (e.g.
> .tif)? )
> That's right. The images were done by a Cellomics machine and the extension is .C01. No problem with that.
>
> I come back to the starting point, how to open the ROI ?...
>
> -----Message d'origine-----
> De : ImageJ Interest Group <
[hidden email]> De la part de Peter Haub
> Envoyé : lundi 3 août 2020 12:09
> À :
[hidden email]
> Objet : Re: open ROI.zip
>
> ".. it does not work .."
> What happens?
>
> replace(path, "ROI.zip", "d1.C01");
> => There is no variable with the name 'path' in your posted macro!
>
> ( I assume you want to open an image after opening the Rois. Therefore you exchange the "ROI.zip" and "d1.C01".
> Is your image file ending with "d1.C01". Is there no extension (e.g.
> .tif)? )
>
>
> On 03.08.2020 11:51, OBEID Patricia 154904 wrote:
>> Thanks Peter,
>> The problem is, I have a long list of images and ROIs. I want to open the image and the corresponding ROIManager and therefore make a loop for my treatments but it does not work.
>> I started my macro like this:
>>
>> dir = getDirectory("Choose a Directory ");
>> dir3 = getDirectory("Choose Destination Directory ");
>>
>> list = getFileList(dir);
>> setBatchMode(true);
>> for (i=0; i<list.length; i++) {
>> if (endsWith(list[i], "ROI.zip")){ //A ADAPTER AU NOM DU CHANNEL
>> roiManager("open", dir+list[i]);
>>
>> //ouvrir image des noyaux
>> pathNuc = replace(path, "ROI.zip", "d1.C01");
>> fileNuc = replace(list[i], "ROI.zip", "d1.C01");
>> open(pathNuc);
>>
>> Can you help me find out what is wrong?
>> Thank you
>>
>>
>>
>>
>> -----Message d'origine-----
>> De : ImageJ Interest Group <
[hidden email]> De la part de Peter
>> Haub Envoyé : lundi 3 août 2020 11:20 À :
[hidden email] Objet :
>> Re: open ROI.zip
>>
>> Hi
>>
>> you can use the Plugins>Macros>Record... function to record the command you are currently using manually.
>> This gives at least important hints.
>>
>> Here is the result for your question:
>>
>> // (optinal) reset RoiManager
>> roiManager("reset");
>>
>> // Select a roi.zip file vai File Open dialog run("Open...");
>>
>> // .. alternatively use a path string pointing to the zip file
>>
>> //roiManager("reset");
>> //roiManager("Open", "C:\\PATH_TO_\\RoiSet.zip");
>>
>> Peter
>>
>> On 03.08.2020 11:01, OBEID Patricia 154904 wrote:
>>> Hello,
>>> I would like using a macro to open the ROI.zip (generated previously in a 1st macro) and apply them to images.
>>> I write 2 macros to simplify my script writing.
>>> But I don't know how to write the command line to open ROI.zip.
>>> Could you help me please ?
>>> I thank you in advance.
>>> Patricia
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