> At the moment I don't expect open the image.
> I try first to open the ROI.zip and after I will can open the image with the replace function.
> But at the moment I don't know how to write the first step.
> I sorry but writing macro is no easy for me.
> Patricia
>
> ____________________________________________________________
>
> Patricia OBEÏD
> Ingénieur de Recherche /Animateur Informatique Biomics
> Institut de Recherche Interdisciplinaire de Grenoble
> CEA/DRF / IRIG / DS /BGE U1038/ Biomics / Bât 4020
> 17 rue des martyrs 38054 Grenoble Cedex 9
> Commissariat à l'énergie atomique et aux énergies alternatives
> Email :
[hidden email]
> Tél : (+33)4 38 78 47 12 Fax : (+33)4 38 78 59 17
>
> Toute notre actualité sur www.cea.fr et sur
http://www.cea.fr/drf/big/bge/biomics>
> Suivez-nous également sur Twitter : @CEA_Recherche et sur
https://twitter.com/BiomicsLab>
>
>
> -----Message d'origine-----
> De : ImageJ Interest Group <
[hidden email]> De la part de Peter Haub
> Envoyé : lundi 3 août 2020 13:14
> À :
[hidden email]
> Objet : Re: open ROI.zip
>
> ???...
> If you already know that there is no variable 'path' how can you expect that the combination
> pathNuc = replace(path, "ROI.zip", "d1.C01");
> open(pathNuc);
> gives a result?
>
> Make sure your path string is correct, e.g. by using the following in your loop:
> path = dir+list[i];
> print(path);
>
> Switch off batch mode by using
> setBatchMode(false);
> to see if this is causing the problem.
>
> On 03.08.2020 12:36, OBEID Patricia 154904 wrote:
>> replace(path, "ROI.zip", "d1.C01");
>> => There is no variable with the name 'path' in your posted macro!
>> Yes, it is an error because I tried a lot of things to open the ROI.zip ...
>> It doesn't work and I cannot continue writing the macro because it all
>> depends on the opening of the ROI ... :-(
>>
>> ( I assume you want to open an image after opening the Rois. Therefore you exchange the "ROI.zip" and "d1.C01".
>> Is your image file ending with "d1.C01". Is there no extension (e.g.
>> .tif)? )
>> That's right. The images were done by a Cellomics machine and the extension is .C01. No problem with that.
>>
>> I come back to the starting point, how to open the ROI ?...
>>
>> -----Message d'origine-----
>> De : ImageJ Interest Group <
[hidden email]> De la part de Peter
>> Haub Envoyé : lundi 3 août 2020 12:09 À :
[hidden email] Objet :
>> Re: open ROI.zip
>>
>> ".. it does not work .."
>> What happens?
>>
>> replace(path, "ROI.zip", "d1.C01");
>> => There is no variable with the name 'path' in your posted macro!
>>
>> ( I assume you want to open an image after opening the Rois. Therefore you exchange the "ROI.zip" and "d1.C01".
>> Is your image file ending with "d1.C01". Is there no extension (e.g.
>> .tif)? )
>>
>>
>> On 03.08.2020 11:51, OBEID Patricia 154904 wrote:
>>> Thanks Peter,
>>> The problem is, I have a long list of images and ROIs. I want to open the image and the corresponding ROIManager and therefore make a loop for my treatments but it does not work.
>>> I started my macro like this:
>>>
>>> dir = getDirectory("Choose a Directory ");
>>> dir3 = getDirectory("Choose Destination Directory ");
>>>
>>> list = getFileList(dir);
>>> setBatchMode(true);
>>> for (i=0; i<list.length; i++) {
>>> if (endsWith(list[i], "ROI.zip")){ //A ADAPTER AU NOM DU CHANNEL
>>> roiManager("open", dir+list[i]);
>>>
>>> //ouvrir image des noyaux
>>> pathNuc = replace(path, "ROI.zip", "d1.C01");
>>> fileNuc = replace(list[i], "ROI.zip", "d1.C01");
>>> open(pathNuc);
>>>
>>> Can you help me find out what is wrong?
>>> Thank you
>>>
>>>
>>>
>>>
>>> -----Message d'origine-----
>>> De : ImageJ Interest Group <
[hidden email]> De la part de Peter
>>> Haub Envoyé : lundi 3 août 2020 11:20 À :
[hidden email] Objet :
>>> Re: open ROI.zip
>>>
>>> Hi
>>>
>>> you can use the Plugins>Macros>Record... function to record the command you are currently using manually.
>>> This gives at least important hints.
>>>
>>> Here is the result for your question:
>>>
>>> // (optinal) reset RoiManager
>>> roiManager("reset");
>>>
>>> // Select a roi.zip file vai File Open dialog run("Open...");
>>>
>>> // .. alternatively use a path string pointing to the zip file
>>>
>>> //roiManager("reset");
>>> //roiManager("Open", "C:\\PATH_TO_\\RoiSet.zip");
>>>
>>> Peter
>>>
>>> On 03.08.2020 11:01, OBEID Patricia 154904 wrote:
>>>> Hello,
>>>> I would like using a macro to open the ROI.zip (generated previously in a 1st macro) and apply them to images.
>>>> I write 2 macros to simplify my script writing.
>>>> But I don't know how to write the command line to open ROI.zip.
>>>> Could you help me please ?
>>>> I thank you in advance.
>>>> Patricia
>>>> ____________________________________________________________
>>>> [
http://www.cea.fr/var/cea/signatures/cea_logo.jpg]<
http://www.cea.f>>>> r
>>>> /
>>>>> [logo_mail]
>>>> Patricia OBEÏD
>>>> Ingénieur de Recherche /Animateur Informatique Biomics Institut de
>>>> Recherche Interdisciplinaire de Grenoble CEA/DRF / IRIG / DS /BGE
>>>> U1038/ Biomics / Bât 4020
>>>> 17 rue des martyrs 38054 Grenoble Cedex 9 Commissariat à l'énergie
>>>> atomique et aux énergies alternatives Email :
>>>>
[hidden email]<mailto:
[hidden email]>
>>>> Tél : (+33)4 38 78 47 12 Fax : (+33)4 38 78 59 17
>>>>
>>>> Toute notre actualité sur www.cea.fr et sur
>>>>
http://www.cea.fr/drf/big/bge/biomics<
http://www.cea.fr/>
>>>>
>>>> <
http://www.cea.fr/>Suivez-nous également sur Twitter :
>>>> @CEA_Recherche<
https://twitter.com/#!/CEA_Recherche> et sur
>>>>
https://twitter.com/BiomicsLab>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>>>>
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