ROI manager problems

Posted by Krs5 on Aug 20, 2020; 10:19am
URL: http://imagej.273.s1.nabble.com/Concentric-Circle-Formation-Slices-tp5023860p5023868.html

Dear list, Wayne

I came across some strange behaviour of the ROI manager when used together with Stack.setPosition. If I run the macro code below and check the ROI in the manager, I find its position is 2, 6, 1 and not at 2, 3, 1

run("Confocal Series");
Stack.setPosition(2, 3, 1);
makeOval(135, 197, 71, 72);
roiManager("Add");

If I try 1, 3, 1 the resulting ROI is at 1, 5, 1.

Furthermore, I noticed that 'Associate "Show All" ROIs with slices' does not seem to work.

Best wishes

Kees


Dr Ir K.R. Straatman
Advanced Imaging Facility

University of Leicester
www.le.ac.uk/advanced-imaging-facility<http://www.le.ac.uk/advanced-imaging-facility>



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