Login  Register

How to access OME Metadata?

Posted by Cammer, Michael-3 on Aug 22, 2020; 6:09pm
URL: http://imagej.273.s1.nabble.com/How-to-access-OME-Metadata-tp5023870.html

Would you please help with how to access metadata imported with Bio-Formats for use in a macro?


We  have Zeiss CZI files with timing metadata that we need to access in ImageJ Fiji.


The metadata are opened using the Bio-Formats Import option "Display OME-XML metadata" and are placed in a text window that has a Java icon in the upper left.  Thsi window is not listed in any of the ImageJ menus.


Using a macro, we want to parse the metadata to extract the times for each plane.  However, we cannot figure out how to get the text data from this text window into the macro.  Doing this for the metadata in the other metadata window is easy, but help would be appreciated how to get the data from this XML window.


Best regards-


Michael Cammer, Sr Research Scientist, DART Microscopy Laboratory

NYU Langone Health, 540 First Avenue, SK2 Microscopy Suite, New York, NY  10016

[hidden email]<mailto:[hidden email]>  http://nyulmc.org/micros  http://microscopynotes.com/

Voice direct only, no text or messages:  1-914-309-3270 and 1-646-501-0567


------------------------------------------------------------
This email message, including any attachments, is for the sole use of the intended recipient(s) and may contain information that is proprietary, confidential, and exempt from disclosure under applicable law. Any unauthorized review, use, disclosure, or distribution is prohibited. If you have received this email in error please notify the sender by return email and delete the original message. Please note, the recipient should check this email and any attachments for the presence of viruses. The organization accepts no liability for any damage caused by any virus transmitted by this email.
=================================

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html