Re: Trouble with setMinAndMax() and exporting an AVI in IJM macro

Posted by rcz on Aug 21, 2020; 6:06pm
URL: http://imagej.273.s1.nabble.com/Trouble-with-setMinAndMax-and-exporting-an-AVI-in-IJM-macro-tp5023866p5023874.html

Hello Volko,

Thank you for your reply and your insights therein. I attempted to add your
suggestion to my macro, and FIJI gave me a "Macro Error" asking me to either
process it as a virtual stack (Process>Batch>Virtual Stack) or to convert it
to a normal stack (Image>Duplicate). So, I added the command
'run("Duplicate...", "duplicate")' to the macro before the call to
'run("Apply LUT")' and it worked as I was expecting. Furthermore, through
further testing, it seemed as though the call to apply LUT was unnecessary;
simply first duplicating the stack produced the desired output AVI.

So, again, thanks for helping me reach a solution to my problem! And, I hope
this helps anyone else who might be experiencing something similar.



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