Re: problem using R-Plot

Posted by Curtis Rueden-2 on Aug 24, 2020; 7:12pm
URL: http://imagej.273.s1.nabble.com/problem-using-R-Plot-tp5023877p5023878.html

Hi Aryeh,

> run("R Histogram", "data_column=Area title=[] x-axis_label=Area
> y-axis_label=Frequency fit=[log-normal fit] show");

Which plugin is this? I don't have an "R Histogram" in my Fiji, and I'm
unfamiliar with it.

If you type "r histogram" into the search bar, what does it say for
"Location" in the right-hand pane?

Thanks,
Curtis

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Curtis Rueden
Software architect, LOCI/Eliceiri lab - https://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
Have you tried the Image.sc Forum? https://forum.image.sc/

On Mon, Aug 24, 2020 at 1:33 PM Aryeh Weiss <[hidden email]> wrote:

> The first time that I use R-Plot after starting Fiji, it works. After
> that, it throws an error saying
>
> Unsupported format not file not found
> /tmp/ in line 6
>
> here is a minimal macro that demonstrates the problem:
>
> run("Blobs (25K)");
> run("Grays");
> setAutoThreshold("Default dark no-reset");
> run("Analyze Particles...", "display exclude clear summarize add");
> run("R Histogram", "data_column=Area title=[] x-axis_label=Area
> y-axis_label=Frequency fit=[log-normal fit] show");
>
> The first time that this is run, it works. Then I get the error stated
> above.
>
> I presume that if ti works once, then my R is ok. I did export
> RPATH="/usr/bin/R" , but that had no effect on the problem.
>
> Thanks in advance for any advice.
>
> --aryeh
>
> --
> Aryeh Weiss
> Faculty of Engineering
> Bar Ilan University
> Ramat Gan 52900 Israel
>
> Ph:  972-3-5317638
> FAX: [phone]
>
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> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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