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Re: problem using R-Plot

Posted by Aryeh Weiss on Aug 25, 2020; 2:30am
URL: http://imagej.273.s1.nabble.com/problem-using-R-Plot-tp5023877p5023879.html

Hi Curtis,

Thank you for your reply.

On 24/08/2020 22:12, Curtis Rueden wrote:
> Hi Aryeh,
>
> > run("R Histogram", "data_column=Area title=[] x-axis_label=Area
> > y-axis_label=Frequency fit=[log-normal fit] show");
>
> Which plugin is this? I don't have an "R Histogram" in my Fiji, and
> I'm unfamiliar with it.

It is part of the Particle Sizer package https://imagej.net/ParticleSizer

It appears in the Analyze menu. I installed it using the update site.

Best regards
--aryeh


> If you type "r histogram" into the search bar, what does it say for
> "Location" in the right-hand pane?
>
> Thanks,
> Curtis
>
> --
> Curtis Rueden
> Software architect, LOCI/Eliceiri lab - https://loci.wisc.edu/software
> ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
> Have you tried the Image.sc Forum? https://forum.image.sc/
>
> On Mon, Aug 24, 2020 at 1:33 PM Aryeh Weiss <[hidden email]
> <mailto:[hidden email]>> wrote:
>
>     The first time that I use R-Plot after starting Fiji, it works. After
>     that, it throws an error saying
>
>     Unsupported format not file not found
>     /tmp/ in line 6
>
>     here is a minimal macro that demonstrates the problem:
>
>     run("Blobs (25K)");
>     run("Grays");
>     setAutoThreshold("Default dark no-reset");
>     run("Analyze Particles...", "display exclude clear summarize add");
>     run("R Histogram", "data_column=Area title=[] x-axis_label=Area
>     y-axis_label=Frequency fit=[log-normal fit] show");
>
>     The first time that this is run, it works. Then I get the error
>     stated
>     above.
>
>     I presume that if ti works once, then my R is ok. I did export
>     RPATH="/usr/bin/R" , but that had no effect on the problem.
>
>     Thanks in advance for any advice.
>
>     --aryeh
>
>     --
>     Aryeh Weiss
>     Faculty of Engineering
>     Bar Ilan University
>     Ramat Gan 52900 Israel
>
>     Ph:  972-3-5317638
>     FAX: 972-3-7384051
>
>     --
>     ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
Aryeh Weiss
Faculty of Engineering
Bar Ilan University
Ramat Gan 52900 Israel

Ph:  972-3-5317638
FAX: 972-3-7384051


--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html