Re: T1 Head stack

Posted by Fred Damen on Nov 12, 2020; 5:46pm
URL: http://imagej.273.s1.nabble.com/T1-Head-stack-tp5024164p5024167.html

Greetings Randy,

Are you referring to the "T1 Head (16bit)" or "T1 Head Rendering"?

I suspect that you are referring to the latter, in which case you should
google MRI surface rendering / reconstruction.  I suspect that
Horos/Osirix, or other "DICOM viewer", will perform this function.

Otherwise...

From a file format perspective neither are cine as they are just a series
of images stored in a TIF file format, i.e., they are not a series of
frames in a video file like AVI.  You can play them in a cine loop, and
convert the file format to video using ImageJ. The original images used to
produce the "T1 Head" TIF file were collected in DICOM format which stores
the physical locations of the acquired slices so that they can be
presented in correct spacial order.

Fred

On Wed, November 11, 2020 8:03 pm, Randy Seedle wrote:
> Is there a tutorial out there somewhere that explains how to build an
> image stack (ie. cine) like the open samples item "T1 Head" in imageJ ??
> Randy Seedle
>
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