Re: T1 Head stack

Posted by Stein Rørvik on Nov 13, 2020; 7:04am
URL: http://imagej.273.s1.nabble.com/T1-Head-stack-tp5024164p5024169.html

According to the info on the web-page I referred to in my previous post, the "T1 Head Rendering" was created using the VolumeJ plugin. I just tried it and there is a choice "Render cine-mode" which produces a stack identical to the view shown in "T1 Head Rendering" using the default options there.

Stein

-----Original Message-----
Sent: 12. november 2020 18:46
Subject: Re: T1 Head stack

Greetings Randy,

Are you referring to the "T1 Head (16bit)" or "T1 Head Rendering"?

I suspect that you are referring to the latter, in which case you should google MRI surface rendering / reconstruction.  I suspect that Horos/Osirix, or other "DICOM viewer", will perform this function.

Otherwise...

From a file format perspective neither are cine as they are just a series of images stored in a TIF file format, i.e., they are not a series of frames in a video file like AVI.  You can play them in a cine loop, and convert the file format to video using ImageJ. The original images used to produce the "T1 Head" TIF file were collected in DICOM format which stores the physical locations of the acquired slices so that they can be presented in correct spacial order.

Fred

On Wed, November 11, 2020 8:03 pm, Randy Seedle wrote:
> Is there a tutorial out there somewhere that explains how to build an
> image stack (ie. cine) like the open samples item "T1 Head" in imageJ ??
> Randy Seedle
>
> --

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