IMS files - open with duplicated file name

Posted by Jacqueline Ross on Dec 22, 2020; 5:08am
URL: http://imagej.273.s1.nabble.com/IMS-files-open-with-duplicated-file-name-tp5024292.html

Hi everyone,

We have a MetaSystems VSlide slide-scanner that has an option to extract files as IMS (Imaris) format. I prefer to use this because it is a hierarchy system where you can choose the resolution level that you need for analysis without having to use the full resolution unless you need to.

However, the file name is duplicated which makes things a bit tricky. Does anyone know how to fix this, e.g. is it something to do with the options I have selected for the Bioformats importer? It's the same for files that come directly from Imaris.

I have attached the log file that has the title of the image listed and a snip of the image details at the top of the image window.

Another option is for me to run a "rename" step that takes the additional characters out but I'm not sure how to do this...

Any help would be much appreciated.

Kind regards,

Jacqui

Jacqueline Ross
Lead Technologist
Optical Microscopy & Image Analysis
Biomedical Imaging Research Unit (BIRU)
School of Medical Sciences
Faculty of Medical & Health Sciences
The University of Auckland
Private Bag 92019
Auckland 1142, NEW ZEALAND

Telephone: Ext 87438; DDI:  [phone]

Website:    http://www.auckland.ac.nz/biru




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