export images after open xml file

Posted by Ken Nguyen on
URL: http://imagej.273.s1.nabble.com/export-images-after-open-xml-file-tp5024430.html

Hi

I have an xml file that created 6 years ago.  I can open in imageJ with TrakEM2.  I can see many layers contain montage TEM images, and many layers are missing.  When I try to export images from the layer that I see, it blanks out with no real TEM images.  I look into system log, it gives me a comment as below:

done recreateBuckets chunk
Crash detector file is G:/Pristionchus/Series15/trakem2.1283239982185.2011277730.99217/trakem2.mipmaps/.open.t2
waiting for TMLHandler fus...
done waiting TMLHandler fus.
Created crash detection system.
removing kl: javax.swing.plaf.basic.BasicTreeUI$Handler@66247465
removing kl: javax.swing.plaf.basic.BasicTreeUI$Handler@a0e1bff
removing kl: javax.swing.plaf.basic.BasicTreeUI$Handler@27a3821c
B set to false
Done Opening displays (1.55s approx.)
C set to false
File not found: G:/Pristionchus/Series15/trakem2.1283239982185.2011277730.99217/trakem2.mipmaps/4/22/67/9.8524_Montage Acquisition0003.dm3.rag
SUBMITTING to regen 8524_Montage Acquisition0003.dm3 z=3080.0 #22679

As I understand that it tries to regenerate mipmaps from original montage files, but I don't have them except xml file.  Is there away the I can export the layer images?  Thanks

Ken

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