ImageJ - Re: color segmentation by area

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Re: color segmentation by area

Posted by Krs5 on
URL: http://imagej.273.s1.nabble.com/color-segmentation-by-area-tp5024728p5024733.html

Dear Paulo,

Not sure if the following plugins do what you want but have a look:

https://imagejdocu.tudor.lu/macro/roi_color_coder
https://imagej.nih.gov/ij/plugins/fraclac/FLHelp/Colour_Selection_Tree.htm
https://imagej.net/plugins/morpholibj#Measurements

Best wishes

Kees

-----Original Message-----
From: Paulo Salinas
Sent: 13 June 2021 22:28
Subject: Re: color segmentation by area

Thanks!

Attached 10X image file (includes metric bar)

Paulo

Paulo Salinas
Institute of Biología
Pontificia Universidad Católica de Valparaíso Av.Universidad#330, Curauma, Valparaíso CHILE
Fono: +56(32)2274840
[hidden email]
https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.morpholab.cl%2F&data=04%7C01%7Ckrs5%40leicester.ac.uk%7C02759757063c4db299e308d92eb2a8c9%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C0%7C637592167158744222%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=GBnmqRT2rpGgoe1wEhMIusdW%2By%2B5SHfjVMMpi5movy4%3D&reserved=0

El dom, 13 jun 2021 a las 17:19, Jacqueline Ross (<
[hidden email]>) escribió:

> Dear Paulo,
>
> It might help if you post one of your H&E images, preferably the one
> that matches the segmentation image you already posted.
>
> Kind regards,
>
> Jacqui
> ------------------------------
> *From:* ImageJ Interest Group <[hidden email]> on behalf of Paulo
> Salinas <[hidden email]>
> *Sent:* Monday, 14 June 2021 7:20 AM
> *To:* [hidden email] <[hidden email]>
> *Subject:* color segmentation by area
>
> Dear all,
>
> I am doing simple morphometric analysis on muscle tissue (HE stained).
> However, I try to make a color segmentation on the tissue according to
> the area of the muscle fibers.
> The goal is for the colors to symbolize area ranges of muscle fiber groups.
> Can you help me with a plugin or paper?
>
> I attach an example that illustrates the segmentation of colors
> according to the area, but in the peripheral nerve (IHC)
>
> All opinion welcome,
>
> Best regards
>
> Paulo
>
>
> Paulo Salinas
> Institute of Biology
> Pontificia Universidad Católica de Valparaíso Av.Universidad#330,
> Curauma, Valparaíso CHILE
> Fono: +56(32)2274840
> [hidden email]
> https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.m
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> 592167158744222%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2
> luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=GBnmqRT2rpGgoe1w
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