transforming a stack in xz and yz

[Glen MacDonald-2]

Hello,
In the case of an epithelium not positioned parallel to the plane of focus, is there a plugin that will can allow tilting the stack in the xy and yx planes then interpolate the source stack to re-orient the epithelium in a new stack?  Volume Viewer can align the stack viewing plane in xz and yz, but cannot transform the stack.

thanks
Glen MacDonald
        Core for Communication Research
Virginia Merrill Bloedel Hearing Research Center
        Cellular Morphology Core
Center on Human Development and Disability
Box 357923
University of Washington
Seattle, WA 98195-7923  USA
[phone]
[hidden email]

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[Saalfeld, Stephan]

This may be it:

http://fiji.sc/Interactive_Stack_Rotation

Best,
Stephan



On Wed, 2014-08-13 at 08:27 -0700, Glen MacDonald wrote:

> Hello,
> In the case of an epithelium not positioned parallel to the plane of focus, is there a plugin that will can allow tilting the stack in the xy and yx planes then interpolate the source stack to re-orient the epithelium in a new stack?  Volume Viewer can align the stack viewing plane in xz and yz, but cannot transform the stack.
>
> thanks
> Glen MacDonald
> Core for Communication Research
> Virginia Merrill Bloedel Hearing Research Center
> Cellular Morphology Core
> Center on Human Development and Disability
> Box 357923
> University of Washington
> Seattle, WA 98195-7923  USA
> [phone]
> [hidden email]
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html