Dear all,
When in a macro I use Analyse Particles on imageA and only select Summarize followed by Find Maxima using as output type "Count" on imageB I get for the first image also the results in the Result table from imageA, followed by the results from imageB. For the next images this does not happen anymore. Example: run("HeLa Cells (1.3M, 48-bit RGB)"); run("Split Channels"); setAutoThreshold("Default dark"); //run("Threshold..."); setOption("BlackBackground", false); run("Convert to Mask"); run("Analyze Particles...", "size=1.33-Infinity circularity=0.50-1.00 exclude summarize"); selectWindow("C1-hela-cells.tif"); run("Find Maxima...", "noise=500 output=Count"); selectWindow("C3-hela-cells.tif"); run("Analyze Particles...", "size=1.33-Infinity circularity=0.50-1.00 exclude summarize"); selectWindow("C1-hela-cells.tif"); run("Find Maxima...", "noise=500 output=Count"); Best wishes Kees Dr Ir K.R. Straatman Senior Experimental Officer Advanced Imaging Facility Centre for Core Biotechnology Services University of Leicester http://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/lite/aif -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
On Dec 1, 2015, at 12:03 PM, Straatman, Kees (Dr.) <[hidden email]> wrote:
> Dear all, > > When in a macro I use Analyse Particles on imageA and only select > Summarize followed by Find Maximausing as output type "Count” on > imageB I get for the first image also the results in the Result table > from imageA, followed by the results from imageB. For the next > images this does not happen anymore. This bug is fixed in the latest ImageJ daily build (1.50f9). -wayne > Example: > run("HeLa Cells (1.3M, 48-bit RGB)"); > run("Split Channels"); > setAutoThreshold("Default dark"); > //run("Threshold..."); > setOption("BlackBackground", false); > run("Convert to Mask"); > run("Analyze Particles...", "size=1.33-Infinity circularity=0.50-1.00 exclude summarize"); > selectWindow("C1-hela-cells.tif"); > run("Find Maxima...", "noise=500 output=Count"); > selectWindow("C3-hela-cells.tif"); > run("Analyze Particles...", "size=1.33-Infinity circularity=0.50-1.00 exclude summarize"); > selectWindow("C1-hela-cells.tif"); > run("Find Maxima...", "noise=500 output=Count); -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Dear Wayne,
Many thanks! Kees ________________________________________ From: ImageJ Interest Group [[hidden email]] on behalf of Rasband, Wayne (NIH/NIMH) [E] [[hidden email]] Sent: 01 December 2015 19:03 To: [hidden email] Subject: Re: unwanted results in result table On Dec 1, 2015, at 12:03 PM, Straatman, Kees (Dr.) <[hidden email]> wrote: > Dear all, > > When in a macro I use Analyse Particles on imageA and only select > Summarize followed by Find Maximausing as output type "Count” on > imageB I get for the first image also the results in the Result table > from imageA, followed by the results from imageB. For the next > images this does not happen anymore. This bug is fixed in the latest ImageJ daily build (1.50f9). -wayne > Example: > run("HeLa Cells (1.3M, 48-bit RGB)"); > run("Split Channels"); > setAutoThreshold("Default dark"); > //run("Threshold..."); > setOption("BlackBackground", false); > run("Convert to Mask"); > run("Analyze Particles...", "size=1.33-Infinity circularity=0.50-1.00 exclude summarize"); > selectWindow("C1-hela-cells.tif"); > run("Find Maxima...", "noise=500 output=Count"); > selectWindow("C3-hela-cells.tif"); > run("Analyze Particles...", "size=1.33-Infinity circularity=0.50-1.00 exclude summarize"); > selectWindow("C1-hela-cells.tif"); > run("Find Maxima...", "noise=500 output=Count); -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Free forum by Nabble | Edit this page |