Hi,
Using 3Dmanager you can write a macro that should look like this :
// open your segmented image (should be labelled)
run("3D Manager");
Ext.Manager3D_AddImage();
Ext.Manager3D_Count(nb);
for(i=nb-1;i>=0;i--){
Ext.Manager3D_Bounding3D(i,x0,x1,y0,y1,z0,z1);
if((z1-z0)==1) {
Ext.Manager3D_Select(i);
Ext.Manager3D_GetName(i, name);
Ext.Manager3D_FillStack(0, 0, 0);
Ext.Manager3D_Delete();
IJ.log("Object "+name+" was erased");
}
}
http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:3d_roi_manager:startBest,
Thomas
On 22/04/15 00:04, henstridge wrote:
> Hey,
> I have image stacks containing 10-30 slices, which have been thresholded and
> altered to 8bit files.
> I would like to generate a stack from this which only contains the objects
> that appear in at least 2 consecutive stacks, because objects in a single
> slice represent background rubbish.
> Does anyone know how i could batch process lots of stacks, removing any
> objects found on a single plane?
> Cheers!
>
>
>
> --
> View this message in context:
http://imagej.1557.x6.nabble.com/3D-stacks-removing-2D-objects-tp5012555.html> Sent from the ImageJ mailing list archive at Nabble.com.
>
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/***************************************************************/
Thomas Boudier, Associate Professor, UPMC,
Université Pierre et Marie Curie, Paris, France.
BioInformatics Institute (BII)/IPAL, Singapore.
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