Add the 'nifti_io' plug-in on a Mac

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Add the 'nifti_io' plug-in on a Mac

rui zhou
Hi all,

I'm trying to add 'nifti_io.jar' to the ImageJ, and I'm now using a Mac. I
tried to put the plug-in file under the 'ImageJ' folder or under the
'Plugin' subfolder, but neither worked. I also tried to run the command
'Plugin -> Compile and Run', but this command doesn't recognize any file
named as '.jar'.
Can anyone tell me how to solve this problem? My images are all .nifti
files, and I'd really like to view them on my computer.
Many thanks!

Cheers,
Rui
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Re: Add the 'nifti_io' plug-in on a Mac

Krs5
Dear Rui,

The nifti file format is also on the list of supported formats by the LOCI Bio-Formats plugin. So try this plugin to open your files.

Cheers

Kees

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of rui zhou
Sent: 25 January 2012 02:45
To: [hidden email]
Subject: Add the 'nifti_io' plug-in on a Mac

Hi all,

I'm trying to add 'nifti_io.jar' to the ImageJ, and I'm now using a Mac. I
tried to put the plug-in file under the 'ImageJ' folder or under the
'Plugin' subfolder, but neither worked. I also tried to run the command
'Plugin -> Compile and Run', but this command doesn't recognize any file
named as '.jar'.
Can anyone tell me how to solve this problem? My images are all .nifti
files, and I'd really like to view them on my computer.
Many thanks!

Cheers,
Rui
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Re: Add the 'nifti_io' plug-in on a Mac

rui zhou
Thanks Kees,

I tried this plugin, but still, nothing changed in the Menu. I put the
plugins('LOCI' and 'nifti_io') under the main folder or the subfolder, but
unlike other people, I don't see the command "File>Import>NIfTI-Analyze".

Cheers,
Rui

On Wed, Jan 25, 2012 at 1:43 AM, Straatman, Kees R. (Dr.) <
[hidden email]> wrote:

> Dear Rui,
>
> The nifti file format is also on the list of supported formats by the LOCI
> Bio-Formats plugin. So try this plugin to open your files.
>
> Cheers
>
> Kees
>
> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of rui
> zhou
> Sent: 25 January 2012 02:45
> To: [hidden email]
> Subject: Add the 'nifti_io' plug-in on a Mac
>
> Hi all,
>
> I'm trying to add 'nifti_io.jar' to the ImageJ, and I'm now using a Mac. I
> tried to put the plug-in file under the 'ImageJ' folder or under the
> 'Plugin' subfolder, but neither worked. I also tried to run the command
> 'Plugin -> Compile and Run', but this command doesn't recognize any file
> named as '.jar'.
> Can anyone tell me how to solve this problem? My images are all .nifti
> files, and I'd really like to view them on my computer.
> Many thanks!
>
> Cheers,
> Rui
>
>
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Re: Add the 'nifti_io' plug-in on a Mac

ctrueden
Hi Rui,

I tried this plugin, but still, nothing changed in the Menu. I put the
> plugins('LOCI' and 'nifti_io') under the main folder or the subfolder, but
> unlike other people, I don't see the command "File>Import>NIfTI-Analyze".
>

Try using Fiji (http://fiji.sc/), which is a distribution of ImageJ that
comes with Bio-Formats and many other useful plugins preinstalled.

To open your files, choose File > Import > Bio-Formats and then select your
file. If it doesn't work, please let us know.

Regards,
Curtis


On Wed, Jan 25, 2012 at 2:41 PM, rui zhou <[hidden email]> wrote:

> Thanks Kees,
>
> I tried this plugin, but still, nothing changed in the Menu. I put the
> plugins('LOCI' and 'nifti_io') under the main folder or the subfolder, but
> unlike other people, I don't see the command "File>Import>NIfTI-Analyze".
>
> Cheers,
> Rui
>
> On Wed, Jan 25, 2012 at 1:43 AM, Straatman, Kees R. (Dr.) <
> [hidden email]> wrote:
>
> > Dear Rui,
> >
> > The nifti file format is also on the list of supported formats by the
> LOCI
> > Bio-Formats plugin. So try this plugin to open your files.
> >
> > Cheers
> >
> > Kees
> >
> > -----Original Message-----
> > From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
> rui
> > zhou
> > Sent: 25 January 2012 02:45
> > To: [hidden email]
> > Subject: Add the 'nifti_io' plug-in on a Mac
> >
> > Hi all,
> >
> > I'm trying to add 'nifti_io.jar' to the ImageJ, and I'm now using a Mac.
> I
> > tried to put the plug-in file under the 'ImageJ' folder or under the
> > 'Plugin' subfolder, but neither worked. I also tried to run the command
> > 'Plugin -> Compile and Run', but this command doesn't recognize any file
> > named as '.jar'.
> > Can anyone tell me how to solve this problem? My images are all .nifti
> > files, and I'd really like to view them on my computer.
> > Many thanks!
> >
> > Cheers,
> > Rui
> >
> >
>