BIOP VSI reader error message

[Mark Bentley]

Hello everyone,

I am using the current version of Fiji along with the Action Bar Plugin
from J. Mutterer:

http://imagejdocu.tudor.lu/doku.php?id=plugin:utilities:action_bar:start

and the .VSI reader provided by EPFL:

http://biop.epfl.ch/INFO_completed_projects.html

I have successfully installed the reader and added the BIOP update site
to the Fiji updater, installed all updates.

The reader works as expected with the sample Dataset from BIOP. Good.

But, when I attempt to open VSI files produced locally, I receive the
following error message, "No series detected, defaulting to simple mode"

Upon clicking OK to acknowledge the message, the "Pick a Series" window
appears but with no options, clicking OK again closes that window and
the plugin appears dead at that point.  The load and navigate features
return messages stating no image is open.

Any help would be much appreciated,

Thanks to all,

--
Mark Bentley
[hidden email]

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Romain Guiet]

Hi Mark,

usually vsi images are saved as a "vsi" files and a folder:
file: Image__01.vsi
folder: _Image__01_

In the past, some users changed the name of the "vsi" but they did not change the name of the folder.
This make the file unreadable by the vsiReader.
One should note that you have to follow the model, i.e. use of the underscore in the folder name.

If it doesn't help, may you send me the corresponding file and folder, for example through a zip archive in a dropbox.

Regards,

Romain


---------------------------------------------------------------
Dr. Romain Guiet
Bioimaging and Optics Platform (PT-BIOP)
Ecole Polytechnique Fédérale de Lausanne (EPFL)
Faculty of Life Sciences
Station 19, AI 0241
CH-1015 Lausanne

Phone: [+4121 69] 39629
http://biop.epfl.ch/
---------------------------------------------------------------

________________________________________
De : ImageJ Interest Group [[hidden email]] de la part de Mark Bentley [[hidden email]]
Date d'envoi : jeudi 18 avril 2013 07:40
À : [hidden email]
Objet : BIOP VSI reader error message

Hello everyone,

I am using the current version of Fiji along with the Action Bar Plugin
from J. Mutterer:

http://imagejdocu.tudor.lu/doku.php?id=plugin:utilities:action_bar:start

and the .VSI reader provided by EPFL:

http://biop.epfl.ch/INFO_completed_projects.html

I have successfully installed the reader and added the BIOP update site
to the Fiji updater, installed all updates.

The reader works as expected with the sample Dataset from BIOP. Good.

But, when I attempt to open VSI files produced locally, I receive the
following error message, "No series detected, defaulting to simple mode"

Upon clicking OK to acknowledge the message, the "Pick a Series" window
appears but with no options, clicking OK again closes that window and
the plugin appears dead at that point.  The load and navigate features
return messages stating no image is open.

Any help would be much appreciated,

Thanks to all,

--
Mark Bentley
[hidden email]

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html