Batch Image Conversion

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Batch Image Conversion

Claire Brown
Does anyone know if there is a way to do a batch conversion of Zeiss LSM
files to .tif files? I know they can be done manually one by one in
ImageJ but I was wondering if there was a way to automate this for a
large number of files.

Claire Brown

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Claire M. Brown, PhD
Life Sciences Complex Imaging Facility Director
McGill University
Department of Physiology
3655 Promenade Sir William Osler
Montreal, Quebec, H3G 1Y6
Rm 1014
514-398-4400 ext 00795 (Phone)
514-398-7452 (FAX)
[hidden email]
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Re: Batch Image Conversion

Martin du Saire
Take a look at the macro FileDemo.txt for some ideas...

http://rsb.info.nih.gov/ij/macros/FileDemo.txt

M
At 03:29 PM 2/3/2006, you wrote:

>Does anyone know if there is a way to do a batch conversion of Zeiss
>LSM files to .tif files? I know they can be done manually one by one
>in ImageJ but I was wondering if there was a way to automate this
>for a large number of files.
>
>Claire Brown
>
>--
>
>Claire M. Brown, PhD
>Life Sciences Complex Imaging Facility Director
>McGill University
>Department of Physiology
>3655 Promenade Sir William Osler
>Montreal, Quebec, H3G 1Y6
>Rm 1014
>514-398-4400 ext 00795 (Phone)
>514-398-7452 (FAX)
>[hidden email]
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Re: Batch Image Conversion

Jerome Mutterer
In reply to this post by Claire Brown
The base LSM Reader provides such function, but the output is grayscale
(raw channels data). For getting all the channels with the original
colors, you can use the LSM_Batch_With_Colors macro
available from :
http://rsb.info.nih.gov/ij/macros/LSM_Batch_With_Colors.txt

A new version of this macro that will also output a merged image with
all channels will be posted to the list next week.

Jerome


Selon Claire Brown <[hidden email]>:

> Does anyone know if there is a way to do a batch conversion of Zeiss
> LSM
> files to .tif files? I know they can be done manually one by one in
> ImageJ but I was wondering if there was a way to automate this for a
> large number of files.
>
> Claire Brown
>
> --
>
> Claire M. Brown, PhD
> Life Sciences Complex Imaging Facility Director
> McGill University
> Department of Physiology
> 3655 Promenade Sir William Osler
> Montreal, Quebec, H3G 1Y6
> Rm 1014
> 514-398-4400 ext 00795 (Phone)
> 514-398-7452 (FAX)
> [hidden email]
>


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