Hi Kailasha,
> when I try to run this macro from matlab via mij I keep getting this
> error "Bio-Formats Importer unrecognized"
Did you try following these directions:
http://imagej.net/MATLAB#Running_ImageJ_within_MATLABIt should be possible to download a fresh copy of Fiji and launch it in
that way from MATLAB as described.
Of particular note: "The startup process automatically injects the ImageJ
classpath into the MATLAB classpath, merging the two."
This means that the Bio-Formats Importer _should_ be available when
launching ImageJ in this way.
Alternately, you do not actually need to use ImageJ-MATLAB or Miji in order
to use Bio-Formats from MATLAB. You can use BF from MATLAB directly. See
this page:
https://www.openmicroscopy.org/site/support/bio-formats/developers/matlab-dev.htmlRegards,
Curtis
--
Curtis Rueden
LOCI software architect -
http://loci.wisc.edu/softwareImageJ2 lead, Fiji maintainer -
http://imagej.net/User:RuedenDid you know ImageJ has a forum?
http://forum.imagej.net/On Thu, Apr 14, 2016 at 10:01 AM, Ju93 <
[hidden email]>
wrote:
> Hi I'm new to imagej and miji.. I'm working on images in .jp2 format which
> can be read using bio-Formats importer.. I recorded the steps involved in
> opening images using bio-format and processing the imported image using
> macro recorder and created a macro.. when I try to run this macro from
> matlab via mij I keep getting this error "Bio-Formats Importer
> unrecognized".. I'm stuck at this point.. I would like to know how I might
> resolve this issue ... thanks
>
>
>
> --
> View this message in context:
>
http://imagej.1557.x6.nabble.com/Bio-Formats-Importer-unrecognized-tp5016136.html> Sent from the ImageJ mailing list archive at Nabble.com.
>
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