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The ImageJ Bio-format Import plugin converts LEICA files to tiff images without problems.
Conversly when I try to use the Bio-Formats command line tool, the LEICA file is not read correctly!
>> bash showinf inputFile.lei
Checking file format [Leica]
Initializing reader
Reading metadata blocks
Parsing metadata blocks
Handling renamed TIFF files
Handling renamed TIFF files
...
Populating metadata
Exception in thread "main" java.lang.IllegalArgumentException: Invalid series: 0
at loci.formats.FormatReader.setSeries(FormatReader.java:638)
at loci.formats.MetadataTools.populatePixels(MetadataTools.java:428)
at loci.formats.MetadataTools.populatePixels(MetadataTools.java:378)
at loci.formats.in.LeicaReader.initFile(LeicaReader.java:901)
at loci.formats.FormatReader.setId(FormatReader.java:901)
at loci.formats.ImageReader.setId(ImageReader.java:588)
at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:448)
at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:809)
at loci.formats.tools.ImageInfo.main(ImageInfo.java:838)
any ideas?
Alternatively how do I write a macro in ImageJ that gives me the list of all the files currently open, so that i can save them sequentially? thanks in advance
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