Compressed DICOM
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I there any way to import compressed DICOM images into ImageJ 1.42o-64-bit?
Thanks Tim =================================== P Please consider the environment before printing this e-mail Cleveland Clinic is ranked one of the top hospitals in America by U.S. News & World Report (2008). Visit us online at http://www.clevelandclinic.org for a complete listing of our services, staff and locations. Confidentiality Note: This message is intended for use only by the individual or entity to which it is addressed and may contain information that is privileged, confidential, and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient or the employee or agent responsible for delivering the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please contact the sender immediately and destroy the material in its entirety, whether electronic or hard copy. Thank you. |
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On imagej "plugIn" menu choose PlugIn--->LOCI--->Bio Format Importer--->
And give path of your compressed Dicom file. It is a plugIn from loci which handle compressed Dicom file. thanks -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Tim Crowe Sent: Friday, June 05, 2009 5:27 PM To: [hidden email] Subject: Compressed DICOM I there any way to import compressed DICOM images into ImageJ 1.42o-64-bit? Thanks Tim =================================== P Please consider the environment before printing this e-mail Cleveland Clinic is ranked one of the top hospitals in America by U.S. News & World Report (2008). Visit us online at http://www.clevelandclinic.org for a complete listing of our services, staff and locations. Confidentiality Note: This message is intended for use only by the individual or entity to which it is addressed and may contain information that is privileged, confidential, and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient or the employee or agent responsible for delivering the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please contact the sender immediately and destroy the material in its entirety, whether electronic or hard copy. Thank you. |
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Unfortunately, this was unsuccessful. Any other ideas?
On 6/5/09 8:37 AM, "prashant" <[hidden email]> wrote: > On imagej "plugIn" menu choose PlugIn--->LOCI--->Bio Format Importer---> > And give path of your compressed Dicom file. > > It is a plugIn from loci which handle compressed Dicom file. > > thanks > > > -----Original Message----- > From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Tim > Crowe > Sent: Friday, June 05, 2009 5:27 PM > To: [hidden email] > Subject: Compressed DICOM > > I there any way to import compressed DICOM images into ImageJ 1.42o-64-bit? > > Thanks > > Tim > > > =================================== > > P Please consider the environment before printing this e-mail > > Cleveland Clinic is ranked one of the top hospitals > in America by U.S. News & World Report (2008). > Visit us online at http://www.clevelandclinic.org for > a complete listing of our services, staff and > locations. > > > Confidentiality Note: This message is intended for use > only by the individual or entity to which it is addressed > and may contain information that is privileged, > confidential, and exempt from disclosure under applicable > law. If the reader of this message is not the intended > recipient or the employee or agent responsible for > delivering the message to the intended recipient, you are > hereby notified that any dissemination, distribution or > copying of this communication is strictly prohibited. If > you have received this communication in error, please > contact the sender immediately and destroy the material in > its entirety, whether electronic or hard copy. Thank you. > =================================== P Please consider the environment before printing this e-mail Cleveland Clinic is ranked one of the top hospitals in America by U.S. News & World Report (2008). Visit us online at http://www.clevelandclinic.org for a complete listing of our services, staff and locations. Confidentiality Note: This message is intended for use only by the individual or entity to which it is addressed and may contain information that is privileged, confidential, and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient or the employee or agent responsible for delivering the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please contact the sender immediately and destroy the material in its entirety, whether electronic or hard copy. Thank you. |
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Hi Tim,
To enable the Bio-Formats plugins, you must download loci_tools.jar from: http://www.loci.wisc.edu/ome/formats-download.html Please be sure you are using the latest version, as we recently simplified support for DICOMs compressed using lossless JPEG. If the plugin fails to import your files, we would be most interested in obtaining a sample non-working dataset from you, to debug the problem. Please contact us at [hidden email] if it does not work for you. If you need a place to upload non-working data, let us know and I will provide you with our FTP server information. HTH, Curtis On Fri, Jun 5, 2009 at 9:35 AM, Tim Crowe <[hidden email]> wrote: > Unfortunately, this was unsuccessful. Any other ideas? > > > On 6/5/09 8:37 AM, "prashant" <[hidden email]> wrote: > > > On imagej "plugIn" menu choose PlugIn--->LOCI--->Bio Format Importer---> > > And give path of your compressed Dicom file. > > > > It is a plugIn from loci which handle compressed Dicom file. > > > > thanks > > > > > > -----Original Message----- > > From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of > Tim > > Crowe > > Sent: Friday, June 05, 2009 5:27 PM > > To: [hidden email] > > Subject: Compressed DICOM > > > > I there any way to import compressed DICOM images into ImageJ > 1.42o-64-bit? > > > > Thanks > > > > Tim > > > > > > =================================== > > > > P Please consider the environment before printing this e-mail > > > > Cleveland Clinic is ranked one of the top hospitals > > in America by U.S. News & World Report (2008). > > Visit us online at http://www.clevelandclinic.org for > > a complete listing of our services, staff and > > locations. > > > > > > Confidentiality Note: This message is intended for use > > only by the individual or entity to which it is addressed > > and may contain information that is privileged, > > confidential, and exempt from disclosure under applicable > > law. If the reader of this message is not the intended > > recipient or the employee or agent responsible for > > delivering the message to the intended recipient, you are > > hereby notified that any dissemination, distribution or > > copying of this communication is strictly prohibited. If > > you have received this communication in error, please > > contact the sender immediately and destroy the material in > > its entirety, whether electronic or hard copy. Thank you. > > > > > =================================== > > P Please consider the environment before printing this e-mail > > Cleveland Clinic is ranked one of the top hospitals > in America by U.S. News & World Report (2008). > Visit us online at http://www.clevelandclinic.org for > a complete listing of our services, staff and > locations. > > > Confidentiality Note: This message is intended for use > only by the individual or entity to which it is addressed > and may contain information that is privileged, > confidential, and exempt from disclosure under applicable > law. If the reader of this message is not the intended > recipient or the employee or agent responsible for > delivering the message to the intended recipient, you are > hereby notified that any dissemination, distribution or > copying of this communication is strictly prohibited. If > you have received this communication in error, please > contact the sender immediately and destroy the material in > its entirety, whether electronic or hard copy. Thank you. > |
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Curtis,
I have sent a separate e-mail to the bioformats e-mail address below with more information. Tim On 6/5/09 1:11 PM, "Curtis Rueden" <[hidden email]> wrote: > Hi Tim, > > To enable the Bio-Formats plugins, you must download loci_tools.jar from: > > http://www.loci.wisc.edu/ome/formats-download.html > > Please be sure you are using the latest version, as we recently simplified > support for DICOMs compressed using lossless JPEG. > > If the plugin fails to import your files, we would be most interested in > obtaining a sample non-working dataset from you, to debug the problem. > > Please contact us at [hidden email] if it does not work for you. > If you need a place to upload non-working data, let us know and I will > provide you with our FTP server information. > > HTH, > Curtis > > On Fri, Jun 5, 2009 at 9:35 AM, Tim Crowe <[hidden email]> wrote: > >> Unfortunately, this was unsuccessful. Any other ideas? >> >> >> On 6/5/09 8:37 AM, "prashant" <[hidden email]> wrote: >> >>> On imagej "plugIn" menu choose PlugIn--->LOCI--->Bio Format Importer---> >>> And give path of your compressed Dicom file. >>> >>> It is a plugIn from loci which handle compressed Dicom file. >>> >>> thanks >>> >>> >>> -----Original Message----- >>> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of >> Tim >>> Crowe >>> Sent: Friday, June 05, 2009 5:27 PM >>> To: [hidden email] >>> Subject: Compressed DICOM >>> >>> I there any way to import compressed DICOM images into ImageJ >> 1.42o-64-bit? >>> >>> Thanks >>> >>> Tim >>> >>> >>> =================================== >>> >>> P Please consider the environment before printing this e-mail >>> >>> Cleveland Clinic is ranked one of the top hospitals >>> in America by U.S. News & World Report (2008). >>> Visit us online at http://www.clevelandclinic.org for >>> a complete listing of our services, staff and >>> locations. >>> >>> >>> Confidentiality Note: This message is intended for use >>> only by the individual or entity to which it is addressed >>> and may contain information that is privileged, >>> confidential, and exempt from disclosure under applicable >>> law. If the reader of this message is not the intended >>> recipient or the employee or agent responsible for >>> delivering the message to the intended recipient, you are >>> hereby notified that any dissemination, distribution or >>> copying of this communication is strictly prohibited. If >>> you have received this communication in error, please >>> contact the sender immediately and destroy the material in >>> its entirety, whether electronic or hard copy. Thank you. >>> >> >> >> =================================== >> >> P Please consider the environment before printing this e-mail >> >> Cleveland Clinic is ranked one of the top hospitals >> in America by U.S. News & World Report (2008). >> Visit us online at http://www.clevelandclinic.org for >> a complete listing of our services, staff and >> locations. >> >> >> Confidentiality Note: This message is intended for use >> only by the individual or entity to which it is addressed >> and may contain information that is privileged, >> confidential, and exempt from disclosure under applicable >> law. If the reader of this message is not the intended >> recipient or the employee or agent responsible for >> delivering the message to the intended recipient, you are >> hereby notified that any dissemination, distribution or >> copying of this communication is strictly prohibited. If >> you have received this communication in error, please >> contact the sender immediately and destroy the material in >> its entirety, whether electronic or hard copy. Thank you. >> > =================================== P Please consider the environment before printing this e-mail Cleveland Clinic is ranked one of the top hospitals in America by U.S. News & World Report (2008). Visit us online at http://www.clevelandclinic.org for a complete listing of our services, staff and locations. Confidentiality Note: This message is intended for use only by the individual or entity to which it is addressed and may contain information that is privileged, confidential, and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient or the employee or agent responsible for delivering the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please contact the sender immediately and destroy the material in its entirety, whether electronic or hard copy. Thank you. |
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In reply to this post by ctrueden
Dear Curtis Rueden,
The transfer was successful. Please let me know what you find. Thank you. Tim On 6/5/09 1:11 PM, "Curtis Rueden" <[hidden email]> wrote: > Hi Tim, > > To enable the Bio-Formats plugins, you must download loci_tools.jar from: > > http://www.loci.wisc.edu/ome/formats-download.html > > Please be sure you are using the latest version, as we recently simplified > support for DICOMs compressed using lossless JPEG. > > If the plugin fails to import your files, we would be most interested in > obtaining a sample non-working dataset from you, to debug the problem. > > Please contact us at [hidden email] if it does not work for you. > If you need a place to upload non-working data, let us know and I will > provide you with our FTP server information. > > HTH, > Curtis > > On Fri, Jun 5, 2009 at 9:35 AM, Tim Crowe <[hidden email]> wrote: > >> Unfortunately, this was unsuccessful. Any other ideas? >> >> >> On 6/5/09 8:37 AM, "prashant" <[hidden email]> wrote: >> >>> On imagej "plugIn" menu choose PlugIn--->LOCI--->Bio Format Importer---> >>> And give path of your compressed Dicom file. >>> >>> It is a plugIn from loci which handle compressed Dicom file. >>> >>> thanks >>> >>> >>> -----Original Message----- >>> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of >> Tim >>> Crowe >>> Sent: Friday, June 05, 2009 5:27 PM >>> To: [hidden email] >>> Subject: Compressed DICOM >>> >>> I there any way to import compressed DICOM images into ImageJ >> 1.42o-64-bit? >>> >>> Thanks >>> >>> Tim >>> >>> >>> =================================== >>> >>> P Please consider the environment before printing this e-mail >>> >>> Cleveland Clinic is ranked one of the top hospitals >>> in America by U.S. News & World Report (2008). >>> Visit us online at http://www.clevelandclinic.org for >>> a complete listing of our services, staff and >>> locations. >>> >>> >>> Confidentiality Note: This message is intended for use >>> only by the individual or entity to which it is addressed >>> and may contain information that is privileged, >>> confidential, and exempt from disclosure under applicable >>> law. If the reader of this message is not the intended >>> recipient or the employee or agent responsible for >>> delivering the message to the intended recipient, you are >>> hereby notified that any dissemination, distribution or >>> copying of this communication is strictly prohibited. If >>> you have received this communication in error, please >>> contact the sender immediately and destroy the material in >>> its entirety, whether electronic or hard copy. Thank you. >>> >> >> >> =================================== >> >> P Please consider the environment before printing this e-mail >> >> Cleveland Clinic is ranked one of the top hospitals >> in America by U.S. News & World Report (2008). >> Visit us online at http://www.clevelandclinic.org for >> a complete listing of our services, staff and >> locations. >> >> >> Confidentiality Note: This message is intended for use >> only by the individual or entity to which it is addressed >> and may contain information that is privileged, >> confidential, and exempt from disclosure under applicable >> law. If the reader of this message is not the intended >> recipient or the employee or agent responsible for >> delivering the message to the intended recipient, you are >> hereby notified that any dissemination, distribution or >> copying of this communication is strictly prohibited. If >> you have received this communication in error, please >> contact the sender immediately and destroy the material in >> its entirety, whether electronic or hard copy. Thank you. >> > =================================== P Please consider the environment before printing this e-mail Cleveland Clinic is ranked one of the top hospitals in America by U.S. News & World Report (2008). Visit us online at http://www.clevelandclinic.org for a complete listing of our services, staff and locations. Confidentiality Note: This message is intended for use only by the individual or entity to which it is addressed and may contain information that is privileged, confidential, and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient or the employee or agent responsible for delivering the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please contact the sender immediately and destroy the material in its entirety, whether electronic or hard copy. Thank you. |
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