Debugging plugin with Loci Bio-formats in netbeans

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Debugging plugin with Loci Bio-formats in netbeans

Tomas Karlsson-2
Hi i have followed the instructions for debugging imagej plugins with imagej at

http://rsb.info.nih.gov/ij/developer/NBTutorial.html


Because of GUI changes the instructions may need a look-over ( "Java Project with Existing Ant Script" is in 6.9.1 called "Java Free-Form project" and the debug commands are in a seperate menu. The line numbers have changed in the compiling and debugging plugins heading .)

Anyhow i am going to write a couple of plugins with GUIs relying on Loci bio-formats library for reading files. Can anyone give me any hints how to integrate the bioformats into the netbeans environment so i can complie and debugg the plugins from within netbeans - all my atemts have resulted in a "package loci.formats.ImageReader; does not exist" error.


Thanks in advance for any hints,


Tomas
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Re: Debugging plugin with Loci Bio-formats in netbeans

ctrueden
Hi Tomas,

Did you try adding loci_tools.jar as a dependency to your project? That
should eliminate the compile-time errors.

-Curtis

On Sat, Mar 19, 2011 at 3:31 PM, Tomas Karlsson <
[hidden email]> wrote:

> Hi i have followed the instructions for debugging imagej plugins with
> imagej at
>
> http://rsb.info.nih.gov/ij/developer/NBTutorial.html
>
>
> Because of GUI changes the instructions may need a look-over ( "Java
> Project with Existing Ant Script" is in 6.9.1 called "Java Free-Form
> project" and the debug commands are in a seperate menu. The line numbers
> have changed in the compiling and debugging plugins heading .)
>
> Anyhow i am going to write a couple of plugins with GUIs relying on Loci
> bio-formats library for reading files. Can anyone give me any hints how to
> integrate the bioformats into the netbeans environment so i can complie and
> debugg the plugins from within netbeans - all my atemts have resulted in a
> "package loci.formats.ImageReader; does not exist" error.
>
>
> Thanks in advance for any hints,
>
>
> Tomas
>
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Re: Debugging plugin with Loci Bio-formats in netbeans

Gabriele Umbriaco
In reply to this post by Tomas Karlsson-2
Can you help me to convert a raw image (1024x1024, 16 bit signed, 256
bit of header-offset, Little-Endian Byte Orderer) in JPG file via
command line in linux machine.
Naturally by ImageJ.
Thanks you, Gabriele.