Duplicate command fails to preserve overlay coordinates relative to image data coordinates.

[Michael Ellis]

The Duplicate command when used with a region of interest to create a copy of a portion of an image, fails to translate the overlay.

For example:

- Open the "Clown"  sample image,
- Use the Oval ROI tool to draw an oval around the clown's right eye. (right to you, not the clown - not that it really matters!)
- Add this oval to the overlay using the "Add Selection" tool.
- Create a rectangular ROI that is larger than and  completely encloses the overlay oval.
- Use the Duplicate command to create a copy of the selected ROI of the image.

The selected portion of the image is duplicated but the oval in the overlay now occupies a different position relative to the clown's eye.

This script the demonstrates the problem:

run("Clown (14K)");
makeOval(147, 62, 90, 44);
run("Add Selection...", "stroke=blue width=2 fill=none");
makeRectangle(111, 34, 166, 113);
run("Duplicate...", "title=clown-1.jpg");


The overlay is duplicated but its position relative to the image is not preserved.

Any thoughts? Is this a bug or a feature that other things rely on?

-- Michael Ellis

[Rasband, Wayne (NIH/NIMH) [E]]

On Nov 18, 2010, at 9:37 AM, [hidden email] wrote:

> The Duplicate command when used with a region of interest to create a copy of a portion of an image, fails to translate the overlay.
>
> For example:
>
> - Open the "Clown"  sample image,
> - Use the Oval ROI tool to draw an oval around the clown's right eye. (right to you, not the clown - not that it really matters!)
> - Add this oval to the overlay using the "Add Selection" tool.
> - Create a rectangular ROI that is larger than and  completely encloses the overlay oval.
> - Use the Duplicate command to create a copy of the selected ROI of the image.
>
> The selected portion of the image is duplicated but the oval in the overlay now occupies a different position relative to the clown's eye.
>
> This script the demonstrates the problem:
>
> run("Clown (14K)");
> makeOval(147, 62, 90, 44);
> run("Add Selection...", "stroke=blue width=2 fill=none");
> makeRectangle(111, 34, 166, 113);
> run("Duplicate...", "title=clown-1.jpg");
>
>
> The overlay is duplicated but its position relative to the image is not preserved.
>
> Any thoughts? Is this a bug or a feature that other things rely on?

... [show rest of quote]

This is a bug that is fixed in the 1.44k daily build.

-wayne

[Michael Ellis]

Wayne,

Wow! that was fast!

Many thanks.

Michael Ellis

On 18 Nov 2010, at 21:30, Rasband, Wayne (NIH/NIMH) [E] wrote:

> On Nov 18, 2010, at 9:37 AM, [hidden email] wrote:
>
>> The Duplicate command when used with a region of interest to create a copy of a portion of an image, fails to translate the overlay.
>>
>> For example:
>>
>> - Open the "Clown"  sample image,
>> - Use the Oval ROI tool to draw an oval around the clown's right eye. (right to you, not the clown - not that it really matters!)
>> - Add this oval to the overlay using the "Add Selection" tool.
>> - Create a rectangular ROI that is larger than and  completely encloses the overlay oval.
>> - Use the Duplicate command to create a copy of the selected ROI of the image.
>>
>> The selected portion of the image is duplicated but the oval in the overlay now occupies a different position relative to the clown's eye.
>>
>> This script the demonstrates the problem:
>>
>> run("Clown (14K)");
>> makeOval(147, 62, 90, 44);
>> run("Add Selection...", "stroke=blue width=2 fill=none");
>> makeRectangle(111, 34, 166, 113);
>> run("Duplicate...", "title=clown-1.jpg");
>>
>>
>> The overlay is duplicated but its position relative to the image is not preserved.
>>
>> Any thoughts? Is this a bug or a feature that other things rely on?
>
> This is a bug that is fixed in the 1.44k daily build.
>
> -wayne

... [show rest of quote]