I have tried to use the FigureJ plugin, I have copied the jar files following the instructions, and FigureJ appears as a shortcut in the plugin list,
but I cannot get any further than this message when try to run the plugin: "Plugin or class not found: "FigureJ_Tool" (java.lang.NoClassDefFoundError: ij/plugin/tool/PluginTool)" This is running 1.45i. However, when I use the plugin in Fiji, I can install it and run it fine. Where do I find the FigureJ_Tool? Audrey AJ Geffen Department of Biology University of Bergen NORWAY -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Hi,
This error is probably due to the fact that you are using an ImageJ version less than 1.46d. The missing PluginTool class was added with 1.46d11. You should upgrade to the latest ImageJ version using Help > Update ImageJ. Let me know if this fixes the problem. Sincerley, Jerome. On 14 November 2012 16:27, Audrey Geffen <[hidden email]> wrote: > I have tried to use the FigureJ plugin, I have copied the jar files > following the instructions, and FigureJ appears as a shortcut in the plugin > list, > but I cannot get any further than this message when try to run the plugin: > "Plugin or class not found: "FigureJ_Tool" (java.lang.NoClassDefFoundError: > ij/plugin/tool/PluginTool)" This is running 1.45i. However, when I use the > plugin in Fiji, I can install it and run it fine. Where do I find the > FigureJ_Tool? > > Audrey > AJ Geffen > Department of Biology > University of Bergen > NORWAY > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
In reply to this post by ajgeffen
Hi Audrey,
On Wed, 14 Nov 2012, Audrey Geffen wrote: > I have tried to use the FigureJ plugin, I have copied the jar files > following the instructions, and FigureJ appears as a shortcut in the > plugin list, but I cannot get any further than this message when try to > run the plugin: "Plugin or class not found: "FigureJ_Tool" > (java.lang.NoClassDefFoundError: ij/plugin/tool/PluginTool)" This is > running 1.45i. However, when I use the plugin in Fiji, I can install it > and run it fine. Where do I find the FigureJ_Tool? The problem is indeed an outdated dependency, as Jerome indicated. Since such problems are so common, we worked very hard in the Fiji project to provide a solution: the updater. It proved so useful (as you realized, because FigureJ runs in Fiji), that the updater migrated to ImageJ2 so that all ImageJ users can benefit from it in the future. Ciao, Johannes -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
In reply to this post by Jerome Mutterer-3
Hi Jerome,
On Wed, 14 Nov 2012, Jerome Mutterer wrote: > This error is probably due to the fact that you are using an ImageJ version > less than 1.46d. The missing PluginTool class was added with 1.46d11. You > should upgrade to the latest ImageJ version using Help > Update ImageJ. You could avoid such user problems in the future by providing your own update site (as discussed at the ImageJ conference). Ciao, Johannes -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
In reply to this post by dscho
Hi Audrey,
On Fri, 16 Nov 2012, Audrey Geffen wrote: > Thanks for the explanation, so does this mean that FigureJ will never > run in ImageJ - only in Fiji and IJ2? No, it means that the easiest way to keep FigureJ up-to-date would be for Jerome to set up an update site and for users to add that update site and install FigureJ. That way, Jerome just would need to upload new versions as he makes them and users would not need to hunt around and look for new versions every once in a while. You can, however, make sure yourself that your ij.jar is up-to-date and that you have the newest FigureJ_.jar. It is just more tedious for the users, that is all. Ciao, Johannes -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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