Fwd: Hello how to open .czi file in image J

[Xi Chen]

Hi there,

A quick question. Does anyone know how to open .czi file in the imageJ?

Thanks in advance!

Xi

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[ctrueden]

Hi Xi,

> Does anyone know how to open .czi file in the imageJ?

The Bio-Formats Importer plugin can open .czi:

http://imagej.net/Bio-Formats

The Fiji distribution of ImageJ comes with Bio-Formats preinstalled:

http://fiji.sc/Downloads

Regards,
Curtis

On Thu, Sep 25, 2014 at 6:25 PM, Xi Chen <[hidden email]> wrote:

> Hi there,
>
> A quick question. Does anyone know how to open .czi file in the imageJ?
>
> Thanks in advance!
>
> Xi
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Xi Chen]

Thanks a lot Curtis! It works well with Fiji.

Xi

On Fri, Sep 26, 2014 at 12:40 PM, Curtis Rueden <[hidden email]> wrote:

> Hi Xi,
>
> > Does anyone know how to open .czi file in the imageJ?
>
> The Bio-Formats Importer plugin can open .czi:
>
> http://imagej.net/Bio-Formats
>
> The Fiji distribution of ImageJ comes with Bio-Formats preinstalled:
>
> http://fiji.sc/Downloads
>
> Regards,
> Curtis
>
> On Thu, Sep 25, 2014 at 6:25 PM, Xi Chen <[hidden email]> wrote:
>
> > Hi there,
> >
> > A quick question. Does anyone know how to open .czi file in the imageJ?
> >
> > Thanks in advance!
> >
> > Xi
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[shukvinay]

I am not able to open czi image via Image J.
How to use the Bioformat system in Windows OS. Please provide the link.

Thanks
Shuk

[shukvinay]

I am not able to open czi image via Image J.
How to use the Bioformat system in Windows OS. Please provide the link.

Thanks
Shuk

[Mark Hiner]

Hi Shuk,

> How to use the Bioformat system in Windows OS. Please provide the link.

To clarify, Bio-Formats is an extension to ImageJ and not a standalone
application, so you will either have to add it to your ImageJ installation
or use Fiji.

The first link Curtis provided, http://imagej.net/Bio-Formats, has
documentation on all the Bio-Formats plugins. The one you want is
Plugins>Bio-Formats>Bio-Formats Importer.

Best,
Mark

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