Hi all,
I tried to use makeOval to draw a set of circles (the macro is shown below). But because it's not center-based, it gave me some trouble when I used the circles later (the center is shifted a little bit.). Can anyone please tell me how to draw the circles based on the center and size? I also tried to use the recorded line: "run("Specify...", "width=250 height=250 x=125 y=125 oval centered");" but I don't know how to transfer a variable to this line. Thanks for any suggestions in advance. open(); //open a text file which contains the names of the images to be saved in. contents = getInfo(); run("Close"); list = split(contents, "\n"); xx=50; yy=50; for (k=1;k<26;k++) { newImage("Untitled", "8-bit White", 500, 500, 1); dotSize = sqrt(25*25-(k-1)*(k-1)); //Calculate the radius of the circles on this image. for (i=1; i<11; i++) { for (j=1;j<11;j++) { x = xx/2+(i-1)*xx-dotSize; //Calculate the left boundary of the circle y = yy/2+(j-1)*yy-dotSize; //Calculate the top boundary of the circle makeOval(x, y, dotSize*2, dotSize*2); //Draw a circle based on the size and the boundary points. run("Fill"); } } run("Select None"); run("Invert"); saveAs("Tiff", list[k]); close(); } ---------------------------------------------- Xuan Yang Graduate Research Assistant School of Civil and Environmental Engineering Georgia Institute of Technology Atlanta, GA 30332-0355 Phone: (404) 385-0058 Fax: (404) 894-2281 |
It seems that shifting of the center is not because of the way to draw the
circle... I used the center-based method, still got the shifting (one pixel) sometimes... -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Xuan Yang Sent: Wednesday, July 27, 2005 7:55 PM To: [hidden email] Subject: Help: use of makeOval Hi all, I tried to use makeOval to draw a set of circles (the macro is shown below). But because it's not center-based, it gave me some trouble when I used the circles later (the center is shifted a little bit.). Can anyone please tell me how to draw the circles based on the center and size? I also tried to use the recorded line: "run("Specify...", "width=250 height=250 x=125 y=125 oval centered");" but I don't know how to transfer a variable to this line. Thanks for any suggestions in advance. open(); //open a text file which contains the names of the images to be saved in. contents = getInfo(); run("Close"); list = split(contents, "\n"); xx=50; yy=50; for (k=1;k<26;k++) { newImage("Untitled", "8-bit White", 500, 500, 1); dotSize = sqrt(25*25-(k-1)*(k-1)); //Calculate the radius of the circles on this image. for (i=1; i<11; i++) { for (j=1;j<11;j++) { x = xx/2+(i-1)*xx-dotSize; //Calculate the left boundary of the circle y = yy/2+(j-1)*yy-dotSize; //Calculate the top boundary of the circle makeOval(x, y, dotSize*2, dotSize*2); //Draw a circle based on the size and the boundary points. run("Fill"); } } run("Select None"); run("Invert"); saveAs("Tiff", list[k]); close(); } ---------------------------------------------- Xuan Yang Graduate Research Assistant School of Civil and Environmental Engineering Georgia Institute of Technology Atlanta, GA 30332-0355 Phone: (404) 385-0058 Fax: (404) 894-2281 |
On Sunday 31 July 2005 04:04, Xuan Yang wrote:
> It seems that shifting of the center is not because of the way to draw the > circle... I used the center-based method, still got the shifting (one > pixel) sometimes... Isn't this because the polygons are drawn from the top left corner of a pixel? Cheers, Gabriel |
Thanks for your reply. Yes, you are right. Finally I got what I want by
converting those double values of diameters to integers. Xuan ---------------------------------------------- Xuan Yang Graduate Research Assistant School of Civil and Environmental Engineering Georgia Institute of Technology Atlanta, GA 30332-0355 Phone: (404) 385-0058 Fax: (404) 894-2281 -----Original Message----- From: ImageJ Interest Group [mailto:[hidden email]]On Behalf Of Gabriel Landini Sent: Sunday, July 31, 2005 7:02 AM To: [hidden email] Subject: Re: Help: use of makeOval On Sunday 31 July 2005 04:04, Xuan Yang wrote: > It seems that shifting of the center is not because of the way to draw the > circle... I used the center-based method, still got the shifting (one > pixel) sometimes... Isn't this because the polygons are drawn from the top left corner of a pixel? Cheers, Gabriel |
In reply to this post by Gabriel Landini
hi there,
i was wondering if there is a plugin or macro somewhere that saves the histogram data of each individual slice of a stack into a file. I am using imageJ under windows. thanks very much for your help. alex ____________________________ Alexander Mock Department of Earth Sciences Durham University South Road Durham DH1 3LE |
> i was wondering if there is a plugin or macro somewhere
> that saves the histogram data of each individual slice of a > stack into a file. I am using imageJ under windows. The StackHistogramLister macro at http://rsb.info.nih.gov/ij/macros/StackHistogramLister.txt does this. I found this macro by searching the directory at http://rsb.info.nih.gov/ij/macros/ -wayne |
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