How to convert volummetric MRI data (sagittal slices) into coronal slices

[Rizwan Mumtaz]

Hello,

For certain application, I have to examine an MRI corpus by creating
coronal slices from the available 26 sagittal slices of the corpus. Is
there a plugin or any other way I can do this? Any help or material will be
extremely appreciated.

Kind regards,
Rizwan

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[Stephan Saalfeld]

Hi,

yes.  You can re-slice the volume

Image > Stacks > Reslice [/]...

You may start at Top or Left, depending on how your images are oriented,
or you rotate them beforehand

Image > Transform > Rotate...

The effective resolution of the resulting coronal slices will be 26px
which sounds little to me but may just be what you want.

Alternatively, you can do arbitrary reslicing with my old Fiji plugin:

http://www.youtube.com/watch?v=7so6zkwvNeQ

Our server is down at this moment, but you can use one of its mirrors

http://fiji.imagej.net/Interactive_Stack_Rotation

Best regards,
Stephan




On Mon, 2013-03-25 at 13:18 +0100, Rizwan Mumtaz wrote:

> Hello,
>
> For certain application, I have to examine an MRI corpus by creating
> coronal slices from the available 26 sagittal slices of the corpus. Is
> there a plugin or any other way I can do this? Any help or material will be
> extremely appreciated.
>
> Kind regards,
> Rizwan
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html