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"Show all ROIs" broken since

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Olivier Burri

"Show all ROIs" broken since

Dear All,

I've updated my Fiji Installation today and cannot view all the ROIs on my images by ticking the "Show all" box in the ROI Manager.
If the ROIs are selected individually, they show up properly on the image, but "show all" seems to hide them all. I have a single slice image..

Thank you for any info regarding this behavior or if you can replicate it.

Best

Oli

Olivier Burri
Engineer - Image Processing
& Software Development
EPFL - SV - PTECH - PTBIOP

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Rizwan Mumtaz
Sent: lundi 25 mars 2013 13:19
To: [hidden email]
Subject: How to convert volummetric MRI data (sagittal slices) into coronal slices

Hello,

For certain application, I have to examine an MRI corpus by creating coronal slices from the available 26 sagittal slices of the corpus. Is there a plugin or any other way I can do this? Any help or material will be extremely appreciated.

Kind regards,
Rizwan

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Michael Schmid

Re: "Show all ROIs" broken since

Hi Oli and all,

it seems that ROI Manager 'Show All' does not work if the "Associate 'Show All' ROIs with Slices" option is set in Roi Manager More>>Options.

With this checkbox, one might expect that only the rois associated with the current slice are displayed with 'show all', but it seems that 'show all' shows nothing at all, even if there is only one slice.

Michael
________________________________________________________________
On Mar 25, 2013, at 14:19, Burri Olivier wrote:

> Dear All,
>
> I've updated my Fiji Installation today and cannot view all the ROIs on my images by ticking the "Show all" box in the ROI Manager.
> If the ROIs are selected individually, they show up properly on the image, but "show all" seems to hide them all. I have a single slice image..
>
> Thank you for any info regarding this behavior or if you can replicate it.
>
> Best
>
> Oli
>
> Olivier Burri

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Olivier Burri

Re: "Show all ROIs" broken since

Hi Michael,

Thanks for the reply. Unchecking "Associate 'Show All ROIs' with Slices" solves the problem indeed, albeit temporarily. That option is very useful :)

All the best,

Oli

Olivier Burri
Engineer - Image Processing
& Software Development
EPFL - SV - PTECH - PTBIOP

-----Original Message-----
From: Michael Schmid [mailto:[hidden email]]
Sent: lundi 25 mars 2013 16:08
To: ImageJ Interest Group; Burri Olivier
Cc: Michael Schmid
Subject: Re: "Show all ROIs" broken since

Hi Oli and all,

it seems that ROI Manager 'Show All' does not work if the "Associate 'Show All' ROIs with Slices" option is set in Roi Manager More>>Options.

With this checkbox, one might expect that only the rois associated with the current slice are displayed with 'show all', but it seems that 'show all' shows nothing at all, even if there is only one slice.

Michael
________________________________________________________________
On Mar 25, 2013, at 14:19, Burri Olivier wrote:

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Rasband, Wayne (NIH/NIMH) [E]

Re: "Show all ROIs" broken since

In reply to this post by Olivier Burri

On Mar 25, 2013, at 9:19 AM, Burri Olivier wrote:

> Dear All,
>
> I've updated my Fiji Installation today and cannot view all the ROIs on my images by ticking the "Show all" box in the ROI Manager.
> If the ROIs are selected individually, they show up properly on the image, but "show all" seems to hide them all. I have a single slice image..
>
> Thank you for any info regarding this behavior or if you can replicate it.

This ImageJ 1.47n regression is fixed in the latest daily build.

-wayne

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