IM3, Nuance reader?
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Can ImageJ, or FIJI, read "IM3" files generated by "Nuance"? If so, how?
-Kenneth Sloan (von meinem iPhone4S gesendet) -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: IM3, Nuance reader? second try
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This looks like the sort of thing that might be in BioFormats - but I don't see
it listed? Any clues? -- Kenneth Sloan [hidden email] On Aug 2, 2013, at 15:17 , Kenneth Sloan <[hidden email]> wrote: > Can ImageJ, or FIJI, read "IM3" files generated by "Nuance"? If so, how? > > -Kenneth Sloan > (von meinem iPhone4S gesendet) > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Hi Ken,
> Can ImageJ, or FIJI, read "IM3" files generated by "Nuance"? Well, you could write to the ome-users mailing list requesting support in Bio-Formats. We would need one or more sample files though. You can upload them using the site: http://qa.openmicroscopy.org.uk/qa/upload/ Just ZIP them first. Thanks, Curtis On Thu, Aug 8, 2013 at 4:32 PM, Kenneth Sloan <[hidden email]> wrote: > This looks like the sort of thing that might be in BioFormats - but I > don't see > it listed? > > Any clues? > > -- > Kenneth Sloan > [hidden email] > > > On Aug 2, 2013, at 15:17 , Kenneth Sloan <[hidden email]> wrote: > > > Can ImageJ, or FIJI, read "IM3" files generated by "Nuance"? If so, how? > > > > -Kenneth Sloan > > (von meinem iPhone4S gesendet) > > > > -- > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: IM3, Nuance reader? second try
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According to the LOCI sight, they have samples, and have closed (someone else's) request as "fixed".
but, it's not recognized by FIJI. Hey, wait…the request was made by "curtis". Would you know anything about that? -- Kenneth Sloan [hidden email] On Aug 8, 2013, at 16:38 , Curtis Rueden <[hidden email]> wrote: > Hi Ken, > >> Can ImageJ, or FIJI, read "IM3" files generated by "Nuance"? > > Well, you could write to the ome-users mailing list requesting support in > Bio-Formats. We would need one or more sample files though. You can upload > them using the site: > > http://qa.openmicroscopy.org.uk/qa/upload/ > > Just ZIP them first. > > Thanks, > Curtis > > > On Thu, Aug 8, 2013 at 4:32 PM, Kenneth Sloan <[hidden email]> wrote: > >> This looks like the sort of thing that might be in BioFormats - but I >> don't see >> it listed? >> >> Any clues? >> >> -- >> Kenneth Sloan >> [hidden email] >> >> >> On Aug 2, 2013, at 15:17 , Kenneth Sloan <[hidden email]> wrote: >> >>> Can ImageJ, or FIJI, read "IM3" files generated by "Nuance"? If so, how? >>> >>> -Kenneth Sloan >>> (von meinem iPhone4S gesendet) >>> >>> -- >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: IM3, Nuance reader? second try
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In reply to this post by ctrueden
If I had specs, I'd be happy to implement it myself. But, I don't even have specs, and
don't have the energy to reverse-engineer it. It's not critical - I have the data in another form (stacks of tiffs). -- Kenneth Sloan [hidden email] On Aug 8, 2013, at 16:38 , Curtis Rueden <[hidden email]> wrote: > Hi Ken, > >> Can ImageJ, or FIJI, read "IM3" files generated by "Nuance"? > > Well, you could write to the ome-users mailing list requesting support in > Bio-Formats. We would need one or more sample files though. You can upload > them using the site: > > http://qa.openmicroscopy.org.uk/qa/upload/ > > Just ZIP them first. > > Thanks, > Curtis > > > On Thu, Aug 8, 2013 at 4:32 PM, Kenneth Sloan <[hidden email]> wrote: > >> This looks like the sort of thing that might be in BioFormats - but I >> don't see >> it listed? >> >> Any clues? >> >> -- >> Kenneth Sloan >> [hidden email] >> >> >> On Aug 2, 2013, at 15:17 , Kenneth Sloan <[hidden email]> wrote: >> >>> Can ImageJ, or FIJI, read "IM3" files generated by "Nuance"? If so, how? >>> >>> -Kenneth Sloan >>> (von meinem iPhone4S gesendet) >>> >>> -- >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: IM3, Nuance reader? second try
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In reply to this post by Kenneth Sloan
Hi Kenneth,
> According to the LOCI sight, they have samples, and have closed (someone else's) request as "fixed". > > but, it's not recognized by FIJI. > > Hey, wait…the request was made by "curtis". Would you know anything about that? Planned .im3 support in Bio-Formats is documented on the OME issue tracking system: http://trac.openmicroscopy.org.uk/ome/ticket/4119 As Curtis mentioned, if you are interested in having Bio-Formats support .im3 files, it would be very helpful if you could upload one or more example files to: http://qa.openmicroscopy.org.uk/qa/upload/ to assist the OME team in testing. Regards, -Melissa On Thu, Aug 08, 2013 at 05:39:02PM -0500, Kenneth Sloan wrote: > According to the LOCI sight, they have samples, and have closed (someone else's) request as "fixed". > > but, it's not recognized by FIJI. > > Hey, wait…the request was made by "curtis". Would you know anything about that? > > -- > Kenneth Sloan > [hidden email] > > > On Aug 8, 2013, at 16:38 , Curtis Rueden <[hidden email]> > wrote: > > > Hi Ken, > > > >> Can ImageJ, or FIJI, read "IM3" files generated by "Nuance"? > > > > Well, you could write to the ome-users mailing list requesting support in > > Bio-Formats. We would need one or more sample files though. You can upload > > them using the site: > > > > http://qa.openmicroscopy.org.uk/qa/upload/ > > > > Just ZIP them first. > > > > Thanks, > > Curtis > > > > > > On Thu, Aug 8, 2013 at 4:32 PM, Kenneth Sloan <[hidden email]> wrote: > > > >> This looks like the sort of thing that might be in BioFormats - but I > >> don't see > >> it listed? > >> > >> Any clues? > >> > >> -- > >> Kenneth Sloan > >> [hidden email] > >> > >> > >> On Aug 2, 2013, at 15:17 , Kenneth Sloan <[hidden email]> wrote: > >> > >>> Can ImageJ, or FIJI, read "IM3" files generated by "Nuance"? If so, how? > >>> > >>> -Kenneth Sloan > >>> (von meinem iPhone4S gesendet) > >>> > >>> -- > >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > >> > >> -- > >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > >> > > > > -- > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: IM3, Nuance reader? second try
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Chicken…egg…chicken…
I'm considering a purchase. The system uses .im3 files. I'd like to be able to process them in ImageJ. But, if I can't, and can't get the specs, then I may not make the purchase - which means that I won't have a bunch of file to upload. Oh well…the search continues. -- Kenneth Sloan [hidden email] On Aug 8, 2013, at 18:32 , Melissa Linkert <[hidden email]> wrote: > Hi Kenneth, > >> According to the LOCI sight, they have samples, and have closed (someone else's) request as "fixed". >> >> but, it's not recognized by FIJI. >> >> Hey, wait…the request was made by "curtis". Would you know anything about that? > > Planned .im3 support in Bio-Formats is documented on the OME issue > tracking system: > > http://trac.openmicroscopy.org.uk/ome/ticket/4119 > > As Curtis mentioned, if you are interested in having Bio-Formats support > .im3 files, it would be very helpful if you could upload one or more > example files to: > > http://qa.openmicroscopy.org.uk/qa/upload/ > > to assist the OME team in testing. > > Regards, > -Melissa > > On Thu, Aug 08, 2013 at 05:39:02PM -0500, Kenneth Sloan wrote: >> According to the LOCI sight, they have samples, and have closed (someone else's) request as "fixed". >> >> but, it's not recognized by FIJI. >> >> Hey, wait…the request was made by "curtis". Would you know anything about that? >> >> -- >> Kenneth Sloan >> [hidden email] >> >> >> On Aug 8, 2013, at 16:38 , Curtis Rueden <[hidden email]> >> wrote: >> >>> Hi Ken, >>> >>>> Can ImageJ, or FIJI, read "IM3" files generated by "Nuance"? >>> >>> Well, you could write to the ome-users mailing list requesting support in >>> Bio-Formats. We would need one or more sample files though. You can upload >>> them using the site: >>> >>> http://qa.openmicroscopy.org.uk/qa/upload/ >>> >>> Just ZIP them first. >>> >>> Thanks, >>> Curtis >>> >>> >>> On Thu, Aug 8, 2013 at 4:32 PM, Kenneth Sloan <[hidden email]> wrote: >>> >>>> This looks like the sort of thing that might be in BioFormats - but I >>>> don't see >>>> it listed? >>>> >>>> Any clues? >>>> >>>> -- >>>> Kenneth Sloan >>>> [hidden email] >>>> >>>> >>>> On Aug 2, 2013, at 15:17 , Kenneth Sloan <[hidden email]> wrote: >>>> >>>>> Can ImageJ, or FIJI, read "IM3" files generated by "Nuance"? If so, how? >>>>> >>>>> -Kenneth Sloan >>>>> (von meinem iPhone4S gesendet) >>>>> >>>>> -- >>>>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >>>> >>>> -- >>>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >>>> >>> >>> -- >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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