IMage 5D

[Knecht, David]

I have a single channel z/t stack that I am trying to open in  
Image5D.  When I try to run the plugin, I can open the series of  
images, but when I add the info for Z and t numbers to the dialog  
box, I get the following error.  Any idea what it means?  Thanks- Dave

java.lang.NoSuchMethodError: ij.ImagePlus.getGlobalCalibration()Lij/
measure/Calibration;
at Image5D.storeCurrentChannelProperties(Image5D.java:1118)
at Image5D.setCurrentPosition(Image5D.java:336)
at Image5D.setCurrentPosition(Image5D.java:314)
at Image5D.setSlice(Image5D.java:296)
at Image5D.setStack(Image5D.java:239)
at Image5D.expandDimension(Image5D.java:1043)
at Image5D.<init>(Image5D.java:117)
at Image5D.<init>(Image5D.java:125)
at Stack_to_Image5D.run(Stack_to_Image5D.java:126)
at Open_Series_As_Image5D.run(Open_Series_As_Image5D.java:32)
at ij.IJ.runUserPlugIn(IJ.java:265)
at ij.IJ.runPlugIn(IJ.java:109)
at ij.Executer.runPlugIn(Executer.java:169)
at ij.Executer.runCommand(Executer.java:131)
at ij.Executer.run(Executer.java:63)
at java.lang.Thread.run(Thread.java:552)


Dr. David Knecht
Department of Molecular and Cell Biology
U-3125
91 N. Eagleville Rd.
University of Connecticut
Storrs, CT 06269
860-486-2200
860-486-4331 (fax)

[Joachim Walter]

David,
the error says that some method in ImageJ, which should be there is
missing (weird). Which version of ImageJ are you running, and which
operating system and Java version are you using? Can you put your data
stack somewhere, where I can download it or mail me a small dataset that
shows the same behaviour?

Joachim

David Knecht-charter schrieb:

> I have a single channel z/t stack that I am trying to open in  Image5D.  
> When I try to run the plugin, I can open the series of  images, but when
> I add the info for Z and t numbers to the dialog  box, I get the
> following error.  Any idea what it means?  Thanks- Dave
>
> java.lang.NoSuchMethodError: ij.ImagePlus.getGlobalCalibration()Lij/
> measure/Calibration;
> at Image5D.storeCurrentChannelProperties(Image5D.java:1118)
> at Image5D.setCurrentPosition(Image5D.java:336)
> at Image5D.setCurrentPosition(Image5D.java:314)
> at Image5D.setSlice(Image5D.java:296)
> at Image5D.setStack(Image5D.java:239)
> at Image5D.expandDimension(Image5D.java:1043)
> at Image5D.<init>(Image5D.java:117)
> at Image5D.<init>(Image5D.java:125)
> at Stack_to_Image5D.run(Stack_to_Image5D.java:126)
> at Open_Series_As_Image5D.run(Open_Series_As_Image5D.java:32)
> at ij.IJ.runUserPlugIn(IJ.java:265)
> at ij.IJ.runPlugIn(IJ.java:109)
> at ij.Executer.runPlugIn(Executer.java:169)
> at ij.Executer.runCommand(Executer.java:131)
> at ij.Executer.run(Executer.java:63)
> at java.lang.Thread.run(Thread.java:552)
>
>
> Dr. David Knecht
> Department of Molecular and Cell Biology
> U-3125
> 91 N. Eagleville Rd.
> University of Connecticut
> Storrs, CT 06269
> 860-486-2200
> 860-486-4331 (fax)

... [show rest of quote]

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