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ImageJ applet Preloaded Sequence Images

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Uril Yakubov

ImageJ applet Preloaded Sequence Images

Hi Users,

I am new to ImageJ. I would like to use ImageJ applet to show image
sequence of Dicom images that are resides on server(27 images). What
should I do?

Thank you for your help!!!

Uril.

Prashant-2-3

Re: ImageJ applet Preloaded Sequence Images

did u mean that images are sorted according to their series number or
instance number
I think u have to read each images and get sorted according to that number.

In my case i have to read images acoording to their instance.
I just read all the images and put their instance number on database
and their path
then i just read according to path.

----- Original Message -----
From: "Uril Yakubov" <[hidden email]>
To: <[hidden email]>
Sent: Thursday, September 04, 2008 6:24 PM
Subject: ImageJ applet Preloaded Sequence Images

> Hi Users,
>
> I am new to ImageJ. I would like to use ImageJ applet to show image
> sequence of Dicom images that are resides on server(27 images). What
> should I do?
>
> Thank you for your help!!!
>
> Uril.
>
>

Uril Yakubov

Re: ImageJ applet Preloaded Sequence Images

Hi Users,

No. I am using ImageJ applet and would like to show all 27 images as one
image sequence in the same way how is implemented in the ImageJ (click
on the file -> Import -> Image Sequence and click on the first image
file). I don't now how to pass parameter to html to see image
sequence.What I did, I zipped all 27 images and passed parameter like
the one zipped file(in my case - Myfile.zip)).

<HTML><BODY>
<applet archive=ij.jar code="ij.ImageJApplet.class" width=0 height=0>
<PARAM NAME=url1 VALUE="http://localhost/imagej/images/Myfile.zip">
</applet>
</BODY></HTML>

But when I ran this html I can see just one image and not 27 images in
sequence.

I would really appreciate some help on this.

On Thu, 2008-09-04 at 19:19 +0530, prashant wrote:

> did u mean that images are sorted according to their series number or
> instance number
> I think u have to read each images and get sorted according to that number.
>
> In my case i have to read images acoording to their instance.
> I just read all the images and put their instance number on database
> and their path
> then i just read according to path.
>
> ----- Original Message -----
> From: "Uril Yakubov" <[hidden email]>
> To: <[hidden email]>
> Sent: Thursday, September 04, 2008 6:24 PM
> Subject: ImageJ applet Preloaded Sequence Images
>
>
> > Hi Users,
> >
> > I am new to ImageJ. I would like to use ImageJ applet to show image
> > sequence of Dicom images that are resides on server(27 images). What
> > should I do?
> >
> > Thank you for your help!!!
> >
> > Uril.
> >
> >

Wayne Rasband

Re: ImageJ applet Preloaded Sequence Images

> Hi Users,
>
> No. I am using ImageJ applet and would like to show all 27 images as
> one
> image sequence in the same way how is implemented in the ImageJ (click
> on the file -> Import -> Image Sequence and click on the first image
> file). I don't now how to pass parameter to html to see image
> sequence.What I did, I zipped all 27 images and passed parameter like
> the one zipped file(in my case - Myfile.zip)).
>
> <HTML><BODY>
> <applet archive=ij.jar code="ij.ImageJApplet.class" width=0 height=0>
> <PARAM NAME=url1 VALUE="http://localhost/imagej/images/Myfile.zip">
> </applet>
> </BODY></HTML>
>
> But when I ran this html I can see just one image and not 27 images in
> sequence.
>
> I would really appreciate some help on this.

Open the 27 DICOM as a stack using File>Import>Image Sequence, save it
using File>Save As>ZIP, then copy the resulting ZIP archive to server.

-wayne

> On Thu, 2008-09-04 at 19:19 +0530, prashant wrote:
>> did u mean that images are sorted according to their series number or
>> instance number
>> I think u have to read each images and get sorted according to that
>> number.
>>
>> In my case i have to read images acoording to their instance.
>> I just read all the images and put their instance number on database
>> and their path
>> then i just read according to path.
>>
>> ----- Original Message -----
>> From: "Uril Yakubov" <[hidden email]>
>> To: <[hidden email]>
>> Sent: Thursday, September 04, 2008 6:24 PM
>> Subject: ImageJ applet Preloaded Sequence Images
>>
>>
>>> Hi Users,
>>>
>>> I am new to ImageJ. I would like to use ImageJ applet to show image
>>> sequence of Dicom images that are resides on server(27 images). What
>>> should I do?
>>>
>>> Thank you for your help!!!
>>>
>>> Uril.
>>>
>>>
>

Uril Yakubov

Re: ImageJ applet Preloaded Sequence Images

In reply to this post by Uril Yakubov

Hi Dr. Parker,

Is there a way for Applet to run command "Image to Stack" automatically,
as you did with plugin URLOpener in program IJAppletTP.java? I have
noticed that applet can't take more than 9 images as a parameters,
therefore I need some automation tool to bring all 27 images to the
client. Do you now how to call "Image to Stack" program from applet?

Thank you for help.

Uril.

On Thu, 2008-09-04 at 12:11 -0400, J.Anthony Parker wrote:

> Uril,
>
>
> The "Images to Stack" command will convert multiple images to a single
> stack, image sequence. see "Image/Stacks/Images to Stack". If you
> haven't already found that command, it may be a help to you.
>
>
> The Import Dicom Sequence plugin in the Input/Output section may be of
> interest. It works locally. I don't think it will work over the
> internet, but it takes care of the problem you are addressing. Since
> version 1.34k ImageJ implements this plugin via "File/Import/Image
> Sequence...".
>
>
> I made some applets a while back which may do something like you
> want. see:
> http://www.med.Harvard.edu/JPNM/ij/applets/
> For example, "ImageJ as a Workstation" may be interesting for you.
> The applet code shows how to pass parameters and to run some ImageJ
> commands.
>
>
> Align3_TP Applet shows a slightly different way to select images.
>
> Tony
>
> J. Anthony Parker, MD PhD
>
> [hidden email]
>
> tel 617 667-5250 fax -2185 comp -5275
>
> page 617 632-7243 #31978
>
> 330 Brookline Ave, Boston, MA, 02215-5400
>
>
>
>
> On Sep 4, 2008, at 9:47 AM, Uril Yakubov wrote:
>
> > Hi Users,
> >
> > No. I am using ImageJ applet and would like to show all 27 images as
> > one
> > image sequence in the same way how is implemented in the ImageJ
> > (click
> > on the file -> Import -> Image Sequence and click on the first image
> > file). I don't now how to pass parameter to html to see image
> > sequence.What I did, I zipped all 27 images and passed parameter
> > like
> > the one zipped file(in my case - Myfile.zip)).
> >
> > <HTML><BODY>
> > <applet archive=ij.jar code="ij.ImageJApplet.class" width=0
> > height=0>
> > <PARAM NAME=url1 VALUE="http://localhost/imagej/images/Myfile.zip">
> > </applet>
> > </BODY></HTML>
> >
> > But when I ran this html I can see just one image and not 27 images
> > in
> > sequence.
> >
> > I would really appreciate some help on this.
> >
> >
> > On Thu, 2008-09-04 at 19:19 +0530, prashant wrote:
> > > did u mean that images are sorted according to their series number
> > > or
> > > instance number
> > > I think u have to read each images and get sorted according to
> > > that number.
> > >
> > > In my case i have to read images acoording to their instance.
> > > I just read all the images and put their instance number on
> > > database
> > > and their path
> > > then i just read according to path.
> > >
> > > ----- Original Message -----
> > > From: "Uril Yakubov" <[hidden email]>
> > > To: <[hidden email]>
> > > Sent: Thursday, September 04, 2008 6:24 PM
> > > Subject: ImageJ applet Preloaded Sequence Images
> > >
> > >
> > > > Hi Users,
> > > >
> > > > I am new to ImageJ. I would like to use ImageJ applet to show
> > > > image
> > > > sequence of Dicom images that are resides on server(27 images).
> > > > What
> > > > should I do?
> > > >
> > > > Thank you for your help!!!
> > > >
> > > > Uril.
> > > >
> > > >
> >
> >
>