Is there a plugin for 3D elastic channel registration?

[Gelman, Laurent]

Hi everybody,

Is there any plugin for ImageJ to make a 3D elastic registration of the different channels of a z-stack image of Tetraspeck beads and to apply thereafter the transformation to our sample?

Thanks in advance for your help and best regards,

Laurent.


___________________________
Laurent Gelman, PhD
Friedrich Miescher Institut
Facility for Advanced Imaging and Microscopy
Head of Light Microscopy
WRO 1066.2.16
Maulbeerstrasse 66
CH-4058 Basel
[phone]
[phone]


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[Stephan Saalfeld]

I do not know one, but you could have a look at

http://elastix.isi.uu.nl/

Very good tool.

Best,
Stephan



On Thu, 2013-05-30 at 09:22 +0000, Gelman, Laurent wrote:

> Hi everybody,
>
> Is there any plugin for ImageJ to make a 3D elastic registration of the different channels of a z-stack image of Tetraspeck beads and to apply thereafter the transformation to our sample?
>
> Thanks in advance for your help and best regards,
>
> Laurent.
>
>
> ___________________________
> Laurent Gelman, PhD
> Friedrich Miescher Institut
> Facility for Advanced Imaging and Microscopy
> Head of Light Microscopy
> WRO 1066.2.16
> Maulbeerstrasse 66
> CH-4058 Basel
> [phone]
> [phone]
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

... [show rest of quote]

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html