JavaScript macro recorder issues?

[Adam Goode]

Hi,

I am testing out the macro recorder to make a JavaScript macro. Using
1.43s, I did a few steps and got this macro:

imp = IJ.openImage("http://rsb.info.nih.gov/ij/images/embryos.jpg");
IJ.run(imp, "8-bit", "");
setAutoThreshold("Default");
//run("Threshold...");
setThreshold(0, 104);
IJ.run(imp, "Convert to Mask", "");
imp.show();


When I did Auto Threshold, it inserted "setAutoThreshold", and
"setThreshold", which are old macro commands and don't work in
JavaScript. Is there a imp.setAutoThreshold() function or something that
it should be recording instead?


Thanks,

Adam

[Rasband, Wayne (NIH/NIMH) [E]]

On Mar 23, 2010, at 4:19 PM, Adam Goode wrote:

> Hi,
>
> I am testing out the macro recorder to make a JavaScript macro. Using
> 1.43s, I did a few steps and got this macro:
>
> imp = IJ.openImage("http://rsb.info.nih.gov/ij/images/embryos.jpg");
> IJ.run(imp, "8-bit", "");
> setAutoThreshold("Default");
> //run("Threshold...");
> setThreshold(0, 104);
> IJ.run(imp, "Convert to Mask", "");
> imp.show();
>
>
> When I did Auto Threshold, it inserted "setAutoThreshold", and
> "setThreshold", which are old macro commands and don't work in
> JavaScript. Is there a imp.setAutoThreshold() function or something that
> it should be recording instead?

This bug is fixed in the 1.43t1 daily build. This is the code that is now recorded:

   imp = IJ.openImage("http://rsb.info.nih.gov/ij/images/embryos.jpg");
   IJ.run(imp, "8-bit", "");
   //run("Threshold...");
   IJ.setAutoThreshold(imp, "Default");
   IJ.setThreshold(imp, 0, 104);
   IJ.run(imp, "Convert to Mask", "");
   imp.show();

-wayne

[Patrick Pirrotte-2]

Dear List,

LSM_Toolbox 4.0g has been released. LSM_Toolbox extends LSM_Reader and
allows full extraction of Zeiss confocal metadata.

Changelog:

- various bugfixing (class cleanup)
- added a the getCZ method in the Reader class to get CZLSMExtended.
Plugins and Macros now have full access to the metadata tree.
- updated to Magic Montage 1.2

You can download LSM_Toolbox 4.0g here:
http://image-archive.org/index.php?id=165

Regards,

Patrick

[Qiaozhi Wei]

Dear Patrick,

Thanks for sharing the LSM toolbox. I am a new user of ImageJ and I just
tried your toolbox. I have two problems after using the batch converter:

1. I can't export the merged image of two channels;
2. Both channels I exported became the same color.

I am wondering if this is something that I should select before I do the
batch convert or it's a bug.

Looking forward to your help. Thanks a lot!

Georgia


2010/3/29 Patrick Pirrotte <[hidden email]>

> Dear List,
>
> LSM_Toolbox 4.0g has been released. LSM_Toolbox extends LSM_Reader and
> allows full extraction of Zeiss confocal metadata.
>
> Changelog:
>
> - various bugfixing (class cleanup)
> - added a the getCZ method in the Reader class to get CZLSMExtended.
> Plugins and Macros now have full access to the metadata tree.
> - updated to Magic Montage 1.2
>
> You can download LSM_Toolbox 4.0g here:
> http://image-archive.org/index.php?id=165
>
> Regards,
>
> Patrick
>

[Patrick Pirrotte-2]

Hi Georgia,

Could you send one of your lsm images to test it?

Thanks,

Patrick



Qiaozhi Wei <[hidden email]>
Sent by: ImageJ Interest Group <[hidden email]>
29/03/2010 21:05
Please respond to
ImageJ Interest Group <[hidden email]>


To
[hidden email]
cc

Subject
Re: LSM_Toolbox 4.0g released






Dear Patrick,

Thanks for sharing the LSM toolbox. I am a new user of ImageJ and I just
tried your toolbox. I have two problems after using the batch converter:

1. I can't export the merged image of two channels;
2. Both channels I exported became the same color.

I am wondering if this is something that I should select before I do the
batch convert or it's a bug.

Looking forward to your help. Thanks a lot!

Georgia


2010/3/29 Patrick Pirrotte <[hidden email]>

> Dear List,
>
> LSM_Toolbox 4.0g has been released. LSM_Toolbox extends LSM_Reader and
> allows full extraction of Zeiss confocal metadata.
>
> Changelog:
>
> - various bugfixing (class cleanup)
> - added a the getCZ method in the Reader class to get CZLSMExtended.
> Plugins and Macros now have full access to the metadata tree.
> - updated to Magic Montage 1.2
>
> You can download LSM_Toolbox 4.0g here:
> http://image-archive.org/index.php?id=165
>
> Regards,
>
> Patrick
>