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Hello,
I am trying to run several macros to split large stacks of DICOM data which
have been converted into a tif file. I have them set up as simple for loops.
However, very often, the either macro will run and output a decimal number
instead of the desired integer, which in turns screws up the rest of the
code. Any ideas on what I am doing wrong? It's not a constant problem.
Usually after several attempts and restarting ImageJ, etc I can get it to
run. Below is the text of one of the macros.
thanks
Gabriel
requires("1.34m")
var zslices=1;
var phases=1;
var k=1;
var j=1;
dir=getDirectory("image");
title = "Substack";
Dialog.create("New Image");
Dialog.addString("Stub:", title);
Dialog.addNumber("zslices:", 14);
Dialog.addNumber("Phases:", 6);
Dialog.show();
stub = Dialog.getString();
zslices = Dialog.getNumber();
phases = Dialog.getNumber();
for (k=1;k<=phases;k++) {
str="";
print("k="+k);
for (j=1; j<zslices; j++) {
str = str + j+(k-1)*zslices+ ",";
}
str = str + k*(zslices); //add last element without a comma at end
print("check3,str="+str);
print("string"+k+"="+str);
run("Substack Maker","slices="+str);
saveAs("tiff", dir+stub+k+".tif");
close();
}
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