Re: Conversion Options

[Malgorzata Swider]

Hi All,
Does anybody know how to change the default setting in:
<Edit-Options-Conversions-Scale When Converting>.
Right now, it is on but I would prefer to have this turned off.

Thanks for any help.
MS

[Nas-5]

Dear all,

I have a set of MRI images. I use stacks->Z project ->
Maximum intensity and I get a beatiful projected 2D
image. However I would like to see if there is any
tool to cread a 3D maximum intensity projected object
(3D image) and be able to rotate it and look at it
from different viewpoints. I appreciate your comments
on this.

Cheers,
Nas



 
____________________________________________________________________________________
Yahoo! Music Unlimited
Access over 1 million songs.
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[Gabriel Landini]

On Friday 10 November 2006 19:46, Malgorzata Swider wrote:
> Does anybody know how to change the default setting in:
> <Edit-Options-Conversions-Scale When Converting>.
> Right now, it is on but I would prefer to have this turned off.

Use the macro recorder to record the syntax of the command you want to apply
and then add that line to the Autorun macro which lives in the
StartupMacros.txt file in the macros directory.
Each time you start IJ, that command will be executed and so the command will
be set.

This is the easiest way to set IJ to your taste, but be aware that if you
distribute your macros, then the recipients have to know your Autorun
settings, otherwise, their defaults will be different and the macro may not
run as intended.

Cheers,
G.
 

[Simon Roussel]

Hello,
There is a plugin for that (I use it for angiography).
http://www.disi.unige.it/person/BerteroM/MedNuc/MIP/MIP.html
Cheers,
Simon


On Fri, 10 Nov 2006 12:17:46 -0800, Nas <[hidden email]> wrote:

>Dear all,
>
>I have a set of MRI images. I use stacks->Z project ->
>Maximum intensity and I get a beatiful projected 2D
>image. However I would like to see if there is any
>tool to cread a 3D maximum intensity projected object
>(3D image) and be able to rotate it and look at it
>from different viewpoints. I appreciate your comments
>on this.
>
>Cheers,
>Nas
>
>
>
>
>____________________________________________________________________________________
>Yahoo! Music Unlimited
>Access over 1 million songs.
>http://music.yahoo.com/unlimited
>=========================================================================

[Nas-5]

Hi Simon,

Thank you very much for your reply and the link. I
downloaded the plugin but when I select it I recieve
an error message that: "Plugin not found: MIP_". I'm
using ImageJ 1.36b. I don't know Java and I can not
figure out what I should do I'm afraid. Any idea?

Best,
Nas

--- Simon Roussel <[hidden email]> wrote:

> Hello,
> There is a plugin for that (I use it for
> angiography).
>
http://www.disi.unige.it/person/BerteroM/MedNuc/MIP/MIP.html

> Cheers,
> Simon
>
>
> On Fri, 10 Nov 2006 12:17:46 -0800, Nas
> <[hidden email]> wrote:
>
> >Dear all,
> >
> >I have a set of MRI images. I use stacks->Z project
> ->
> >Maximum intensity and I get a beatiful projected 2D
> >image. However I would like to see if there is any
> >tool to cread a 3D maximum intensity projected
> object
> >(3D image) and be able to rotate it and look at it
> >from different viewpoints. I appreciate your
> comments
> >on this.
> >
> >Cheers,
> >Nas
> >
> >
> >
> >
>
>____________________________________________________________________________________
> >Yahoo! Music Unlimited
> >Access over 1 million songs.
> >http://music.yahoo.com/unlimited
>
>=========================================================================
>

 
____________________________________________________________________________________
Do you Yahoo!?
Everyone is raving about the all-new Yahoo! Mail beta.
http://new.mail.yahoo.com

[Nas-5]

I just upgraded to ImageJ 1.37v and now the error
message that I get is:

Plugin or class not found:"MIP_"
(java.lang.NoClassDefFoundError:MIP_(wrong name:
Mip_))

Thanks for your help in advance,
Nas

--- Nas <[hidden email]> wrote:

> Hi Simon,
>
> Thank you very much for your reply and the link. I
> downloaded the plugin but when I select it I recieve
> an error message that: "Plugin not found: MIP_". I'm
> using ImageJ 1.36b. I don't know Java and I can not
> figure out what I should do I'm afraid. Any idea?
>
> Best,
> Nas
>
> --- Simon Roussel <[hidden email]> wrote:
>
> > Hello,
> > There is a plugin for that (I use it for
> > angiography).
> >
>

http://www.disi.unige.it/person/BerteroM/MedNuc/MIP/MIP.html

> > Cheers,
> > Simon
> >
> >
> > On Fri, 10 Nov 2006 12:17:46 -0800, Nas
> > <[hidden email]> wrote:
> >
> > >Dear all,
> > >
> > >I have a set of MRI images. I use stacks->Z
> project
> > ->
> > >Maximum intensity and I get a beatiful projected
> 2D
> > >image. However I would like to see if there is
> any
> > >tool to cread a 3D maximum intensity projected
> > object
> > >(3D image) and be able to rotate it and look at
> it
> > >from different viewpoints. I appreciate your
> > comments
> > >on this.
> > >
> > >Cheers,
> > >Nas
> > >
> > >
> > >
> > >
> >
>
>____________________________________________________________________________________
> > >Yahoo! Music Unlimited
> > >Access over 1 million songs.
> > >http://music.yahoo.com/unlimited
> >
>
>=========================================================================
> >
>
>
>
>  
>

____________________________________________________________________________________
> Do you Yahoo!?
> Everyone is raving about the all-new Yahoo! Mail
> beta.
> http://new.mail.yahoo.com
>



 
____________________________________________________________________________________
Do you Yahoo!?
Everyone is raving about the all-new Yahoo! Mail beta.
http://new.mail.yahoo.com

[Thomas Carlier]

  Hi Nas,

The solution is very simple... Just check in the MIP_.java file that the
definition of the class is : "public class MIP_ implements PlugInFilter"
instead of "public class Mip_ implements PlugInFilter"

Then recompile and it should work

Hope this help

Thomas Carlier

Nas a écrit:

>I just upgraded to ImageJ 1.37v and now the error
>message that I get is:
>
>Plugin or class not found:"MIP_"
>(java.lang.NoClassDefFoundError:MIP_(wrong name:
>Mip_))
>
>Thanks for your help in advance,
>Nas
>
>--- Nas <[hidden email]> wrote:
>
>  
>
>>Hi Simon,
>>
>>Thank you very much for your reply and the link. I
>>downloaded the plugin but when I select it I recieve
>>an error message that: "Plugin not found: MIP_". I'm
>>using ImageJ 1.36b. I don't know Java and I can not
>>figure out what I should do I'm afraid. Any idea?
>>
>>Best,
>>Nas
>>
>>--- Simon Roussel <[hidden email]> wrote:
>>
>>    
>>
>>>Hello,
>>>There is a plugin for that (I use it for
>>>angiography).
>>>
>>>      
>>>
>http://www.disi.unige.it/person/BerteroM/MedNuc/MIP/MIP.html
>  
>
>>>Cheers,
>>>Simon
>>>
>>>
>>>On Fri, 10 Nov 2006 12:17:46 -0800, Nas
>>><[hidden email]> wrote:
>>>
>>>      
>>>
>>>>Dear all,
>>>>
>>>>I have a set of MRI images. I use stacks->Z
>>>>        
>>>>
>>project
>>    
>>
>>>->
>>>      
>>>
>>>>Maximum intensity and I get a beatiful projected
>>>>        
>>>>
>>2D
>>    
>>
>>>>image. However I would like to see if there is
>>>>        
>>>>
>>any
>>    
>>
>>>>tool to cread a 3D maximum intensity projected
>>>>        
>>>>
>>>object
>>>      
>>>
>>>>(3D image) and be able to rotate it and look at
>>>>        
>>>>
>>it
>>    
>>
>>>>from different viewpoints. I appreciate your
>>>comments
>>>      
>>>
>>>>on this.
>>>>
>>>>Cheers,
>>>>Nas
>>>>
>>>>
>>>>
>>>>
>>>>        
>>>>
>>____________________________________________________________________________________
>>    
>>
>>>>Yahoo! Music Unlimited
>>>>Access over 1 million songs.
>>>>http://music.yahoo.com/unlimited
>>>>        
>>>>
>>=========================================================================
>>    
>>
>>
>>
>>
>>    
>>
>____________________________________________________________________________________
>  
>
>>Do you Yahoo!?
>>Everyone is raving about the all-new Yahoo! Mail
>>beta.
>>http://new.mail.yahoo.com
>>
>>    
>>
>
>
>
>
>____________________________________________________________________________________
>Do you Yahoo!?
>Everyone is raving about the all-new Yahoo! Mail beta.
>http://new.mail.yahoo.com
>
>  
>

[Malgorzata Swider]

I does not work :(
Any thoughts?
MS

----- Original Message -----
From: "Gabriel Landini" <[hidden email]>
To: <[hidden email]>
Sent: Saturday, November 11, 2006 6:31 AM
Subject: Re: Conversion Options

> On Friday 10 November 2006 19:46, Malgorzata Swider wrote:
>> Does anybody know how to change the default setting in:
>> <Edit-Options-Conversions-Scale When Converting>.
>> Right now, it is on but I would prefer to have this turned off.
>
> Use the macro recorder to record the syntax of the command you want to
> apply
> and then add that line to the Autorun macro which lives in the
> StartupMacros.txt file in the macros directory.
> Each time you start IJ, that command will be executed and so the command
> will
> be set.
>
> This is the easiest way to set IJ to your taste, but be aware that if you
> distribute your macros, then the recipients have to know your Autorun
> settings, otherwise, their defaults will be different and the macro may
> not
> run as intended.
>
> Cheers,
> G.
>

[Gabriel Landini]

On Monday 13 November 2006 16:44, Malgorzata Swider wrote:
> I does not work :(

Can you post the AutRun macro?

Cheers,

G.