Opening Mosaix zvi files with Bio-Formats

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Opening Mosaix zvi files with Bio-Formats

Jan Eglinger-3
Dear Bio-Formats specialists,

I used to open zvi files that were acquired by Zeiss AxioVision software
in MosaiX mode (without overlap, and without using the software's
stitching). With previous versions of bio-formats, each file was opened
as a single tiled image containing all tiles in the correct order.
After recent updates, the Bio-Formats importer recognizes the tiles as
separate series, and asks for the series to be opened.

How can I open the file (all tiles) as a single image now?

(In the dialog, I checked "Open all series" and "Concatenate series when
compatible", but that results in a hyperstack with the series as time
points. "Stacks>Make Montage..." doesn't help in this case, because it
does not work with hyperstacks.)

Any help is appreciated.
Thanks,
Jan
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Re: Opening Mosaix zvi files with Bio-Formats

Jan Eglinger-3
On 14.06.2011 10:48 AM, Jan Eglinger wrote:
>
> How can I open the file (all tiles) as a single image now?

I forgot to add that I have z-stacks for each tile image.
(2 channels, 12 z slices, 3x3 tile mosaic)

Jan