Plotting Iso Surfaces in imageJ-

[syedbasim]

I have CT images form clinic.

Images have been processed successfully (was the most difficult part)

The resultant images are  2D slices of  153 by 150 each (initially stored as Matlab variables), where the total number of slices are 24.

Each image has been saved as a JPEG.  

So firstly can i create a 3D stack/volume from these 24 images representing each slice and then

plot isosurface pertaining to each slice. I am attaching the first two images i.e first two slices

regards

Basim.

[dscho]

Hi Basim,

On Mon, 3 Sep 2012, syedbasim wrote:

> I have CT images form clinic.

If I understand correctly (you never mentioned explicitly what you want to
do) you want to make isosurface renderings from the stacks. You might be
interested in using the 3D Viewer from the Fiji distribution of ImageJ:

        http://fiji.sc/3D_Viewer

> Images have been processed successfully (was the most difficult part)
>
> The resultant images are  2D slices of  153 by 150 each (initially
> stored as Matlab variables), where the total number of slices are 24.

You might be interested in controlling Fiji from Matlab, then, so that you
do not have to save data in one program just to load it in another program
and then go back to continue analysis:

        http://fiji.sc/Miji

> Each image has been saved as a JPEG.  

Actually, you might want to refrain from continuing that practice:

        http://fiji.sc/IP_Principles#Why_.28lossy.29_JPEGs_should_not_be_used_in_imaging

Hth,
Johannes

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