Problem Running StackReg

[ERIC]

Hi  all,
I recently used StackReg and it was working fine. I tried to use it
today and don't understand what I did but it doesn't work anymore and
gives me this message :

ImageJ 1.47t; Java 1.6.0_20 [32-bit]; Windows 7 6.1; 20MB of 1400MB (1%)

java.lang.NoSuchMethodError: turboRegPointHandler.<init>(ILij/ImagePlus;)V
     at TurboReg_.alignImages(TurboReg_.java:969)
     at TurboReg_.run(TurboReg_.java:567)
     at ij.IJ.runUserPlugIn(IJ.java:194)
     at ij.IJ.runPlugIn(IJ.java:160)
     at ij.IJ.runPlugIn(IJ.java:149)
     at StackReg_.registerSlice(StackReg_.java:1057)
     at StackReg_.run(StackReg_.java:266)
     at ij.IJ.runUserPlugIn(IJ.java:194)
     at ij.IJ.runPlugIn(IJ.java:160)
     at ij.Executer.runCommand(Executer.java:128)
     at ij.Executer.run(Executer.java:64)
     at java.lang.Thread.run(Thread.java:619)

--

Eric Denarier
Grenoble Institut des Neurosciences
Inserm U836
Chemin Fortuné Ferrini
38700 La Tronche
France


Tél :[phone]
Fax :[phone]

http://neurosciences.ujf-grenoble.fr/Problem

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[dscho]

Hi Eric,

On Fri, 5 Jul 2013, Eric Denarier wrote:

> I recently used StackReg and it was working fine. I tried to use it
> today and don't understand what I did but it doesn't work anymore and
> gives me this message :
>
> ImageJ 1.47t; Java 1.6.0_20 [32-bit]; Windows 7 6.1; 20MB of 1400MB (1%)
>
> java.lang.NoSuchMethodError: turboRegPointHandler.<init>(ILij/ImagePlus;)V
>     at TurboReg_.alignImages(TurboReg_.java:969)

The more interesting information would be where you got TurboReg from. I
just had a look at that line in the TurboReg version we ship with Fiji:

        http://fiji.sc/TurboReg_.java:969

It appears that the alignImages() method constructs a turboRegPointHandler
with the parameters "targetImp" and "transformation", but your stack trace
suggests that it calls them in the opposite order.

This could be caused by all kinds of things, including unpacked .java
sources of TurboReg that were inadvertently edited, or TurboReg being
bundled in different .jar files, or really quite a number of issues. I'd
suggest having a look at your plugins/ directory and figuring out where
your TurboReg_ class lives (as .class or inside a .jar file -- you can
unpack .jar files as if they were .zip files) and where your
turboRegPointHandler class lives. Chances are that they come from
incompatible places.

Ciao,
Johannes

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[ERIC]

Thanks Johannes,

I finally reinstall Fiji to have everything working correctly !!!


Eric Denarier
Grenoble Institut des Neurosciences
Inserm U836
Chemin Fortuné Ferrini
38700 La Tronche
France


Tél :[phone]
Fax :[phone]

http://neurosciences.ujf-grenoble.fr/

Le 05/07/2013 16:46, Johannes Schindelin a écrit :

> Hi Eric,
>
> On Fri, 5 Jul 2013, Eric Denarier wrote:
>
>> I recently used StackReg and it was working fine. I tried to use it
>> today and don't understand what I did but it doesn't work anymore and
>> gives me this message :
>>
>> ImageJ 1.47t; Java 1.6.0_20 [32-bit]; Windows 7 6.1; 20MB of 1400MB (1%)
>>
>> java.lang.NoSuchMethodError: turboRegPointHandler.<init>(ILij/ImagePlus;)V
>>      at TurboReg_.alignImages(TurboReg_.java:969)
> The more interesting information would be where you got TurboReg from. I
> just had a look at that line in the TurboReg version we ship with Fiji:
>
> http://fiji.sc/TurboReg_.java:969
>
> It appears that the alignImages() method constructs a turboRegPointHandler
> with the parameters "targetImp" and "transformation", but your stack trace
> suggests that it calls them in the opposite order.
>
> This could be caused by all kinds of things, including unpacked .java
> sources of TurboReg that were inadvertently edited, or TurboReg being
> bundled in different .jar files, or really quite a number of issues. I'd
> suggest having a look at your plugins/ directory and figuring out where
> your TurboReg_ class lives (as .class or inside a .jar file -- you can
> unpack .jar files as if they were .zip files) and where your
> turboRegPointHandler class lives. Chances are that they come from
> incompatible places.
>
> Ciao,
> Johannes
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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