Hi,
I am having difficulties uploading Leica confocal files with MBP Image J to work with. It's only some of the files that cannot be opened either in the LOCI opening options or with the standard open file... I get an error message (pasted below). I've checked the web to see, if anyone has experienced a similar problem, but haven't found anything related to it. I would greatly appreciate, if someone could help. regards, Waldemar ----------------------------------------------------------------------------------------------- java.lang.ArrayIndexOutOfBoundsException: -1 at java.util.Vector.get(Vector.java:696) at loci.formats.ome.OMEXML200809Metadata.getImageNode(OMEXML200809Metadata.java:5675) at loci.formats.ome.OMEXML200809Metadata.setImageCreationDate(OMEXML200809Metadata.java:3409) at loci.formats.meta.FilterMetadata.setImageCreationDate(FilterMetadata.java:643) at loci.formats.in.LeicaHandler.startElement(LeicaHandler.java:715) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(AbstractSAXParser.java:501) at com.sun.org.apache.xerces.internal.parsers.AbstractXMLDocumentParser.emptyElement(AbstractXMLDocumentParser.java:179) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(XMLDocumentFragmentScannerImpl.java:1339) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2747) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:648) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:510) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:807) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:737) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:107) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1205) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:522) at javax.xml.parsers.SAXParser.parse(SAXParser.java:395) at javax.xml.parsers.SAXParser.parse(SAXParser.java:198) at loci.common.XMLTools.parseXML(XMLTools.java:277) at loci.common.XMLTools.parseXML(XMLTools.java:252) at loci.formats.in.LIFReader.initMetadata(LIFReader.java:383) at loci.formats.in.LIFReader.initFile(LIFReader.java:315) at loci.formats.FormatReader.setId(FormatReader.java:901) at loci.plugins.importer.Importer.run(Importer.java:267) at loci.plugins.LociImporter.run(LociImporter.java:77) at ij.IJ.runUserPlugIn(IJ.java:180) at ij.IJ.runPlugIn(IJ.java:147) at ij.IJ.runPlugIn(IJ.java:136) at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:229) at HandleExtraFileTypes.run(HandleExtraFileTypes.java:37) at ij.IJ.runUserPlugIn(IJ.java:180) at ij.IJ.runPlugIn(IJ.java:147) at ij.IJ.runPlugIn(IJ.java:136) at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:384) at ij.io.Opener.openImage(Opener.java:278) at ij.io.Opener.openImage(Opener.java:301) at ij.io.Opener.open(Opener.java:137) at ij.io.Opener.openMultiple(Opener.java:106) at ij.plugin.Commands.run(Commands.java:21) at ij.IJ.runPlugIn(IJ.java:153) at ij.Executer.runCommand(Executer.java:122) at ij.Executer.run(Executer.java:59) at java.lang.Thread.run(Thread.java:619) |
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