Problems to import of zvi data (Axio Vision Zeiss)

[Karsten Rodenacker]

Are there any experiences to read zvi data into ImageJ?

Assuming that dragging those files into ImageJ is using the  
zvi_reader plugin, I have tried also the bio-format importer. The  
latter lets crash my ImageJ (maxOSX)!

Unluckily I have data not readable with either plugin and others  
readable only by zvi_reader.

Hints are appreciated

Karsten Rodenacker




Karsten Rodenacker
-------------------------------------------------------------------- :-)
GSF - Forschungszentrum     Institute of Biomathematics and Biometry
D-85758 Oberschleissheim    Postfach 11 29
Karsten.Rodenacker_AT_gsf.de | http://ibb.gsf.de/
http://ibb.gsf.de/homepage/karsten.rodenacker/
Tel: [phone] | FAX: ..193401

[Michel Boudinot]

Le 15 janv. 07, à 11:48, Karsten Rodenacker a écrit :

> Are there any experiences to read zvi data into ImageJ?
>
> Assuming that dragging those files into ImageJ is using the zvi_reader  
> plugin, I have tried also the bio-format importer. The latter lets  
> crash my ImageJ (maxOSX)!
>
> Unluckily I have data not readable with either plugin and others  
> readable only by zvi_reader.
>
> Hints are appreciated
>
> Karsten Rodenacker
>

Hi Karsten,

I have no problem opening our zvi images using zvi_reader plugin, can  
you send me a zvi file that does not open,  in order to diagnose the  
problem and improve the plugin code.
What application are you using to generate your zvi files?

Michel.

--  
------------------------------------------------------------------------
-----------------------
INAF - CNRS  -  Michel Boudinot
91198 Gif sur Yvette,  France
Tel:  [phone]  -  Fax: [phone]
Mel: [hidden email]
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-----------------------

[ctrueden]

Hi Karsten,

Regarding Bio-Formats on Mac OS X, there is a bug in OS X that causes
Java to crash when attempting to preview certain data files -- ZVI,
OIB and probably IPW -- in the Preview pane in column view. You can
work around this by choosing Edit>Options>Input/Output from the ImageJ
menu, and checking the "Use JFileChooser to Open/Save" option.

If your ZVI still does not open with Bio-Formats, let me know and LOCI
will investigate the matter.

Thanks,
Curtis

On 1/15/07, Karsten Rodenacker <[hidden email]> wrote:

> Are there any experiences to read zvi data into ImageJ?
>
> Assuming that dragging those files into ImageJ is using the
> zvi_reader plugin, I have tried also the bio-format importer. The
> latter lets crash my ImageJ (maxOSX)!
>
> Unluckily I have data not readable with either plugin and others
> readable only by zvi_reader.
>
> Hints are appreciated
>
> Karsten Rodenacker
>
>
>
>
> Karsten Rodenacker
> -------------------------------------------------------------------- :-)
> GSF - Forschungszentrum     Institute of Biomathematics and Biometry
> D-85758 Oberschleissheim    Postfach 11 29
> Karsten.Rodenacker_AT_gsf.de | http://ibb.gsf.de/
> http://ibb.gsf.de/homepage/karsten.rodenacker/
> Tel: [phone] | FAX: ..193401
>