Public bank of bio-images
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Public bank of bio-images
 
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Re: Public bank of bio-images
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Re: Public bank of bio-images
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In reply to this post by Adrián Villalba
Hi Adrián,
We discussed this some at the Cyto 2017 conference in our 3D image analysis workshop. What would be really useful, I think for you and a lot of others, is if there were test sets of representative image data that could be used to benchmark new algorithms. Ideally this would include different modes, dimensions, etc. (e.g., 2D, 3D, timelapse, spectral, etc.). To my knowledge there isn't a comprehensive set of reference image sets out there for use in benchmarking. However, there are certainly example image sets that could be downloaded from different group websites. A couple examples I can think of: -Human Cell Atlas. There are a bunch of images - you will want to do some digging through the web site to familiarize yourself with how it's structured and what types of images you are looking for: http://www.proteinatlas.org/humancell -Image Data Resource. Again a bunch of data sets and you will want to take some time to orient yourself with the data: http://idr.openmicroscopy.org/about/ -Data from Cell Profiler tutorials. These are smaller data sets intended to demonstrate a specific analysis pipeline: http://cellprofiler.org/ Hopefully some of these will be helpful, and there's likely even more out there, this is just what I thought of off the top of my head. Best regards, Silas On 8/24/2017 9:36 AM, Adrián Villalba wrote: > Dear ImageJers, > > I found on the imageJdocu webpage this database of images ( > http://sipi.usc.edu/database/). Does anyone know if there is something > similar to a database from bio-images that i can use in Fiji to test macros > and something related? I mean, if i can use public images rather than my > own microscope images (bright or fluorescence). > > Thank you very much! > -- Silas J. Leavesley, Ph.D. Professor Department of Chemical and Biomolecular Engineering Department of Pharmacology Center for Lung Biology University of South Alabama 150 Jaguar Drive, SH4129 Mobile, AL 36688 ph: (251)-460-6160 fax: (251)-461-1485 web: http://www.southalabama.edu/centers/bioimaging google scholar: http://scholar.google.co.uk/citations?user=knkwcj4AAAAJ ------------------------------------------------------------------------ <http://www.southalabama.edu/> <https://spie.org/> <http://www.usahealthsystem.com/clb> -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html  USA_Logo_Left_Black(small).jpg (52K) Download Attachment SPIE-Senior-Member-logo_35pix.jpg (31K) Download Attachment CLB 1_100pix.jpg (35K) Download Attachment |
Re: Public bank of bio-images
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Re: Public bank of bio-images
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