Re: Open images in JACoP plugin

[Daniel James White]

Hi Cristina,

On Nov 30, 2011, at 6:02 AM, IMAGEJ automatic digest system wrote:
>
> Dear All,
> I've installed the JACoP Plugin for ImageJ to calculate the
> colocalization of fluorescence images.
> My problem is that I'm unable to open the images with tha JACoP plugin.

JACoP should be able to use any 2 already open images....
can you describe how you open the images and then what you do to try to open them in JACoP

If you open the images as normal imageJ z stacks or single images,
one stack or image per colour channel,
you should be fine.

> My Images are open in the ImageJ software, but when I open the plugin
> he don't recognize the images to analyze.
> Can someone help me to analyze the images?

The object based methods in JACoP are really nice.
The pixel based correlation methods have been
updated and modernised in the new plugin that you get bundled
with the Fiji distribution of imageJ.
The new actively developed  colocalization plugin is called Coloc_2

Install Fiji and run the Fiji updater to get it.

http://fiji.sc    Fiji -  is just ImageJ (Batteries Included)
http://fiji.sc/Colocalization_Analysis

We should port the nice object based methods in JACoP to this new plugin also....
any takers?

cheers

Dan


>
> Best regards
> Cristina Massi Benedetti

Dr. Daniel James White BSc. (Hons.) PhD

Leader - Quantitative Image Analysis Unit,
Senior Microscopist,
Light Microscopy Facility.

Max Planck Institute of Molecular Cell Biology and Genetics
Pfotenhauerstrasse 108
01307 DRESDEN
Germany

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