Real-time GPU-based 3D Deconvolution

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Real-time GPU-based 3D Deconvolution

lechristophe
I'd like to point a recent article in Optics Express about a new ImageJ
plugin for GPU-accelerated deconvolution:

Bruce MA, Butte MJ. Real-time GPU-based 3D Deconvolution. Opt Express. 2013
Feb 25;21(4):4766-73. doi: 10.1364/OE.21.004766
http://www.opticsinfobase.org/oe/abstract.cfm?uri=oe-21-4-4766

It seems like the plugin is available by email request to the authors,
don't know if they'll provide the source code:
http://tcell.stanford.edu/software.html

Don't know either how it compares to existing deconvolution plugins, but I
figured it would interest some people here.

Cheers,

Christophe

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Re: Real-time GPU-based 3D Deconvolution

John Oreopoulos
The paper mentions an ImageJ plugin and documentation that can be downloaded from the researcher's lab website. However, when I visited the site a few days after the paper came out, I could not find anything there. I emailed Dr. Butte directly to ask him about this. He replied, saying he was surprised at how fast the paper was published (Optics Express mind you), before he had a chance to upload it to his website. He said he would try to make it available soon. He also mentioned that anyone wanting to use the plugin should make sure they have the right kind of GPU installed on their computer.

John Oreopoulos

On 2013-03-15, at 5:45 AM, Christophe Leterrier <[hidden email]> wrote:

> I'd like to point a recent article in Optics Express about a new ImageJ
> plugin for GPU-accelerated deconvolution:
>
> Bruce MA, Butte MJ. Real-time GPU-based 3D Deconvolution. Opt Express. 2013
> Feb 25;21(4):4766-73. doi: 10.1364/OE.21.004766
> http://www.opticsinfobase.org/oe/abstract.cfm?uri=oe-21-4-4766
>
> It seems like the plugin is available by email request to the authors,
> don't know if they'll provide the source code:
> http://tcell.stanford.edu/software.html
>
> Don't know either how it compares to existing deconvolution plugins, but I
> figured it would interest some people here.
>
> Cheers,
>
> Christophe
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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Re: Real-time GPU-based 3D Deconvolution

Prodanov Dimiter
In reply to this post by lechristophe
Hi,

It will be interesting to try out. My experience with GPU/CUDA acceleration is that the performance is substantially better a multicore CPU implementation only in the high end CUDA GPUS.

Best regards,

Dimiter

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