Hi Everyone,
I am looking for an ImageJ plugin to perform Sholl analysis on dendritic arbors. I have heard that ImageJ can be used for this type of analysis.
I found an ImageJ plugin called "Sholl analysis" at
http://imagejdocu.tudor.lu/doku.php?id=plugin:analysis:asa:startThis looks like it would do the job nicely, however, I cannot find the jar or class file for it. If anyone knows if it exists and/or where to locate the plugin file, please let me know.
Other plugins I have come across:
NeuronJ: can trace neurons but does not appear capable of Sholl analysis.
Simple Neurite Tracer: appears capable of Sholl analysis but is listed as a Fiji plugin. At the moment I would rather stick to ImageJ plugins as I do not fully understand how Fiji differs from ImageJ, and how commonly Fije is used/cited.
Any help for this ImageJ newbie would be appreciated.
Thanks!
Adam