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> Is there a way to save a .tif file with the ROIs highlighted and
> numbered with the "Show All" command under the ROI Manager? Thanks,
One way would be to use the ROI Manager's More>>Label command. To
highlight in color, you must first convert the image to RGB
(Image>Type>RGB Color) and select a color by double clicking on the eye
dropper tool. Another way would be to capture the screen by pressing
shift-g (Plugins>Utilities>Capture Screen), select the image, and crop.
In ImageJ 1.38h or later, you will be able to crop by pressing shift-x,
the keyboard shortcut for the Image>Crop command.
-wayne
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