Hello,
If you want to introduce even more automation to your workflow, you could
also consider using a for loop based on the name of your images - it seems
like you might have some set that goes from "Sh488 Ph568 PSD95 647
63x_1.lsm" to "Sh488 Ph568 PSD95 647 63x_2.lsm", etc. If that's the case,
you could do:
for(variable=1; variable<=100; variable++){
open("Sh488 Ph568 PSD95 647 63x_"+variable+".lsm);
run("Split Channels");
etc
}
Best,
Will
On Fri, Jan 17, 2014 at 2:29 PM, George Patterson <
[hidden email]>wrote:
> Hi,
> Modify your macro with the following lines.
> Hopefully, one of the selectWindow lines below will work for you.
> George
>
> macro "Neurite Tracer Action Tool - C000R11ee" {
> imageTitle=getTitle();//returns a string with the image title
> run("Split Channels");
>
> selectWindow("C1-"+imageTitle);
> //concatenate "C1-" or whichever channel you want with the string returned
> above
>
> or maybe use
>
> selectWindow(imageTitle+" (green)");
> //this concatenates the title of the image with the channel designation in
> the new image
>
>
>
> On Fri, Jan 17, 2014 at 12:57 PM, mia2005 <
[hidden email]>
> wrote:
>
> > Hi,
> > I am trying to create a very simple macro that starts by splitting an
> image
> > into its 3 or 4 channels (colors),
> > then I want the program to always select the image which name starts with
> > C1; or even better the green channel. However, when I record, the macro
> > saves the specific name of the image that I used to create my macro and I
> > don't know how to replace this for "any image starting with C1" for
> > example,
> > or even better, the green-channel window.
> >
> > Thanks a lot for your help.
> >
> > This is my macro
> >
> > // A click on the empty rectangle will have the same
> > // effect as File>Save As>Jpeg...
> >
> > macro "Neurite Tracer Action Tool - C000R11ee" {
> >
> > run("Split Channels");
> > selectWindow("C1-Sh488 Ph568 PSD95 647 63x_18.lsm");
> > call("ij3d.ImageJ3DViewer.setCoordinateSystem", "false");
> > run("Simple Neurite Tracer", " choice=[Create New 3D Viewer]
> > resampling=1");
> >
> >
> >
> >
> > --
> > View this message in context:
> >
http://imagej.1557.x6.nabble.com/Select-window-name-X-tp5006167.html> > Sent from the ImageJ mailing list archive at Nabble.com.
> >
> > --
> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >
>
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