Sholl analysis

[Chiara Magliaro]

Hi all,

I have some problems with advanced shill analysis, implemented by Ferreira
and Maddock.
In fact, i follow the instruction for the plugin installation (at
http://imagejdocu.tudor.lu/doku.php?id=plugin:analysis:asa:start), but I
get the following error in the "Compile and Run" section:

/Applications/ImageJ/plugins/advanced_sholl_analysis.java:33: class
Advanced_Sholl_Analysis is public, should be declared in a file named
Advanced_Sholl_Analysis.java

public class Advanced_Sholl_Analysis implements PlugIn {

       ^

/Applications/ImageJ/plugins/advanced_sholl_analysis.java:704: cannot find
symbol

symbol  : variable POLY5

location: class ij.measure.CurveFitter

                    cf.doFit(CurveFitter.POLY5, false);

                                        ^

/Applications/ImageJ/plugins/advanced_sholl_analysis.java:706: cannot find
symbol

symbol  : variable POLY6

location: class ij.measure.CurveFitter

                    cf.doFit(CurveFitter.POLY6, false);

                                        ^

/Applications/ImageJ/plugins/advanced_sholl_analysis.java:708: cannot find
symbol

symbol  : variable POLY7

location: class ij.measure.CurveFitter

                    cf.doFit(CurveFitter.POLY7, false);

                                        ^

/Applications/ImageJ/plugins/advanced_sholl_analysis.java:710: cannot find
symbol

symbol  : variable POLY8

location: class ij.measure.CurveFitter

                    cf.doFit(CurveFitter.POLY8, false);

Does anybody help me?
Thank you a lot
Best regards

Chiara

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[Tiago Ferreira-2]

Hi Chiara,

Two things:

> I have some problems with advanced shill analysis, implemented by Ferreira
> and Maddock.


1) It seems that you are running an outdated version of ImageJ. You should
   update it to at least ImageJ 1.46h using (Help>Update ImageJ). The latest
   version of ImageJ is 1.47c (You may want to use Fiji to make sure you
   are always up to date)
2) As mentioned in the download section, you have to make sure the file is
   named "Advanced_Sholl_Analysis", rather than advanced_sholl_analysis,
   (Upper/lower case matters)

Hope that helps;

Best,
-tiago

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[Michael Schmid]

Hi Chiara,

looks like you have an old version of ImageJ. Use Help>Update ImageJ.

Michael
________________________________________________________________
On 2012-Sep-27, at 11:28, Chiara Magliaro wrote:

> Hi all,
>
> I have some problems with advanced shill analysis, implemented by Ferreira
> and Maddock.
> In fact, i follow the instruction for the plugin installation (at
> http://imagejdocu.tudor.lu/doku.php?id=plugin:analysis:asa:start), but I
> get the following error in the "Compile and Run" section:
>
> /Applications/ImageJ/plugins/advanced_sholl_analysis.java:33: class
> Advanced_Sholl_Analysis is public, should be declared in a file named
> Advanced_Sholl_Analysis.java
>
> public class Advanced_Sholl_Analysis implements PlugIn {
>
>      ^
>
> /Applications/ImageJ/plugins/advanced_sholl_analysis.java:704: cannot find
> symbol
>
> symbol  : variable POLY5
>
> location: class ij.measure.CurveFitter
>
>                   cf.doFit(CurveFitter.POLY5, false);
>
>                                       ^
>
> /Applications/ImageJ/plugins/advanced_sholl_analysis.java:706: cannot find
> symbol
>
> symbol  : variable POLY6
>
> location: class ij.measure.CurveFitter
>
>                   cf.doFit(CurveFitter.POLY6, false);
>
>                                       ^
>
> /Applications/ImageJ/plugins/advanced_sholl_analysis.java:708: cannot find
> symbol
>
> symbol  : variable POLY7
>
> location: class ij.measure.CurveFitter
>
>                   cf.doFit(CurveFitter.POLY7, false);
>
>                                       ^
>
> /Applications/ImageJ/plugins/advanced_sholl_analysis.java:710: cannot find
> symbol
>
> symbol  : variable POLY8
>
> location: class ij.measure.CurveFitter
>
>                   cf.doFit(CurveFitter.POLY8, false);
>
> Does anybody help me?
> Thank you a lot
> Best regards
>
> Chiara
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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[Chiara Magliaro]

Thank you!

Chiara

2012/9/27 Tiago Ferreira <[hidden email]>

> Hi Chiara,
>
> Two things:
>
> > I have some problems with advanced shill analysis, implemented by
> Ferreira
> > and Maddock.
>
>
> 1) It seems that you are running an outdated version of ImageJ. You should
>    update it to at least ImageJ 1.46h using (Help>Update ImageJ). The
> latest
>    version of ImageJ is 1.47c (You may want to use Fiji to make sure you
>    are always up to date)
> 2) As mentioned in the download section, you have to make sure the file is
>    named "Advanced_Sholl_Analysis", rather than advanced_sholl_analysis,
>    (Upper/lower case matters)
>
> Hope that helps;
>
> Best,
> -tiago
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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