Simple Neurite Tracer issue

[Glen MacDonald-2]

The Simple Neurite Tracer plugin is throwing an error suddenly.  I cannot find the method in question, but the SNT was running a few weeks ago when last used on this Mac OS10.8.2 system.   Any suggestions?


the message is "Could not find method javax.media.j3d.Shape3D.setName(Ljava/lang/String;)V (See Log for details)"
jthe log file is:

java.lang.NoSuchMethodError: javax.media.j3d.Shape3D.setName(Ljava/lang/String;)V
        at ij3d.shapes.BoundingBox.<init>(BoundingBox.java:59)
        at ij3d.shapes.BoundingBox.<init>(BoundingBox.java:33)
        at ij3d.shapes.BoundingBox.<init>(BoundingBox.java:29)
        at ij3d.ContentInstant.display(ContentInstant.java:194)
        at ij3d.ContentInstant.displayAs(ContentInstant.java:138)
        at ij3d.ContentCreator.createContent(ContentCreator.java:105)
        at ij3d.ContentCreator.createContent(ContentCreator.java:63)
        at ij3d.Image3DUniverse.addContent(Image3DUniverse.java:848)
        at tracing.Simple_Neurite_Tracer.run(Simple_Neurite_Tracer.java:450)
        at ij.IJ.runUserPlugIn(IJ.java:185)
        at ij.IJ.runPlugIn(IJ.java:152)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:597)
        at ij.Command.runPlugIn(Command.java:148)
        at ij.Command.runCommand(Command.java:97)
        at ij.Executer.run(Executer.java:64)
        at java.lang.Thread.run(Thread.java:680)

The class javax.media.j3d.Shape3D can be found here:
/System/Library/Java/Extensions/j3dcore.jar
---------

Thanks

Glen MacDonald
        Core for Communication Research
Virginia Merrill Bloedel Hearing Research Center
        Cellular Morphology Core
Center on Human Development and Disability
Box 357923
University of Washington
Seattle, WA 98195-7923  USA
[phone]
[hidden email]
[hidden email]






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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[dscho]

Hi Glen,

On Sun, 3 Mar 2013, Glen MacDonald wrote:

> The Simple Neurite Tracer plugin is throwing an error suddenly.  I
> cannot find the method in question, but the SNT was running a few weeks
> ago when last used on this Mac OS10.8.2 system.   Any suggestions?

This is my mistake. In my endeavor to support launching ImageJ 1.x with
the ImageJ launcher, I broke overriding MacOSX' pre-historic Java3D with a
current one.

Will fix today,
Johannes

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Glen MacDonald-2]

Thank you, Johannes. Glad I could assist your debugging ;-)
Glen MacDonald
        Core for Communication Research
Virginia Merrill Bloedel Hearing Research Center
        Cellular Morphology Core
Center on Human Development and Disability
Box 357923
University of Washington
Seattle, WA 98195-7923  USA
[phone]
[hidden email]
[hidden email]





On Mar 4, 2013, at 6:46 AM, Johannes Schindelin <[hidden email]> wrote:

> Hi Glen,
>
> On Sun, 3 Mar 2013, Glen MacDonald wrote:
>
>> The Simple Neurite Tracer plugin is throwing an error suddenly.  I
>> cannot find the method in question, but the SNT was running a few weeks
>> ago when last used on this Mac OS10.8.2 system.   Any suggestions?
>
> This is my mistake. In my endeavor to support launching ImageJ 1.x with
> the ImageJ launcher, I broke overriding MacOSX' pre-historic Java3D with a
> current one.
>
> Will fix today,
> Johannes

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[dscho]

Hi Glen,

On Mon, 4 Mar 2013, Glen MacDonald wrote:

> Thank you, Johannes. Glad I could assist your debugging ;-)

Heh... I already did the debugging, and even the fixing, but forgot to
upload the new launcher version.

Fixed now,
Johannes

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