TiffDecoder: Negative Seek Offset

[granto]

Hello everyone,

When I try to open a large (>2GB) 16-bit TIFF file in imagej, tiffdecoder reports "negative seek offset" and does not open the file.   "Maximum memory" is set to 8000mb "parallel threads for stacks" is 4 in the memory (64-bit) menu of imagej.

Strangely, I never had a problem with this before, but then I reinstalled Windows XP 64bit on a RAID 0 volume.  It's the only change I've made that I can think of, so I thought it might be the problem.  However, reinstalling imagej (and JRE) on a non-RAID partition didn't help.  Is it my OS?  

Suggestions?

Thanks,
Grant

ImageJ 1.43u
Java1.6.0_12 (64-bit)
Intel core 2 quad
8GB RAM
RAID 0, 128K stripe

[granto]

I should have mentioned that I tried debug mode, which doesn't seem to output anything when I get the error:

runPlugin: ij.plugin.Commands open
actionPerformed: time=1275845373781, java.awt.event.ActionEvent[ACTION_PERFORMED,cmd=Open...,when=1275845373781,modifiers=] on menuitem0
openImage: "tif", I:\Data\Grant\100602\rot_cy35_alone_0.tif


 Here is a screenshot of the error... so I open the file (either through file>open or through windows explorer's context menu), the error message appears, I click OK, and nothing happens.

 Here is debug output after successfully opening a file that is identical but just smaller (with less pages).
 
Thanks for any and all help!
Grant

[Rasband, Wayne (NIH/NIMH) [E]]

On Jun 5, 2010, at 6:58 PM, granto wrote:

> Hello everyone,
>
> When I try to open a large (>2GB) 16-bit TIFF file in imagej, tiffdecoder
> reports "negative seek offset" and does not open the file.   "Maximum
> memory" is set to 8000mb "parallel threads for stacks" is 4 in the memory
> (64-bit) menu of imagej.
>
> Strangely, I never had a problem with this before, but then I reinstalled
> Windows XP 64bit on a RAID 0 volume.  It's the only change I've made that I
> can think of, so I thought it might be the problem.  However, reinstalling
> imagej (and JRE) on a non-RAID partition didn't help.  Is it my OS?

The ImageJ 1.44c5 daily build fixes a bug that caused a "negative seek offset" error when opening >2GB TIFF files.

-wayne

>  Suggestions?
>
> Thanks,
> Grant
>
> ImageJ 1.43u
> Java1.6.0_12 (64-bit)
> Intel core 2 quad
> 8GB RAM
> RAID 0, 128K stripe
> --
> View this message in context: http://imagej.588099.n2.nabble.com/TiffDecoder-Negative-Seek-Offset-tp5144173p5144173.html
> Sent from the ImageJ mailing list archive at Nabble.com.